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P02407 (RS17A_YEAST) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 118. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (5) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
40S ribosomal protein S17-A
Alternative name(s):
RP51A
Gene names
Name:RPS17A
Synonyms:RP51A
Ordered Locus Names:YML024W
OrganismSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) [Reference proteome]
Taxonomic identifier559292 [NCBI]
Taxonomic lineageEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces

Protein attributes

Sequence length136 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Subunit structure

Component of the small ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains 32 different proteins (encoded by 56 genes) and 1 molecule of RNA (18S). The 60S subunit contains 46 different proteins (encoded by 81 genes) and 3 molecules of RNA (25S, 5.8S and 5S). Ref.4

Subcellular location

Cytoplasm Ref.5.

Miscellaneous

Present with 30900 molecules/cell in log phase SD medium.

There are 2 genes for S17 in yeast.

Sequence similarities

Belongs to the ribosomal protein S17e family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 13613640S ribosomal protein S17-A HAMAP-Rule MF_00511
PRO_0000141546

Secondary structure

............... 136
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P02407 [UniParc].

Last modified July 21, 1986. Version 1.
Checksum: 956E5382870EA289

FASTA13615,788
        10         20         30         40         50         60 
MGRVRTKTVK RASKALIERY YPKLTLDFQT NKRLCDEIAT IQSKRLRNKI AGYTTHLMKR 

        70         80         90        100        110        120 
IQKGPVRGIS FKLQEEERER KDQYVPEVSA LDLSRSNGVL NVDNQTSDLV KSLGLKLPLS 

       130 
VINVSAQRDR RYRKRV 

« Hide

References

« Hide 'large scale' references
[1]"Expression of a beta-galactosidase gene containing the ribosomal protein 51 intron is sensitive to the rna2 mutation of yeast."
Teem J.L., Rosbash M.
Proc. Natl. Acad. Sci. U.S.A. 80:4403-4407(1983) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: RY26.
[2]"The nucleotide sequence of Saccharomyces cerevisiae chromosome XIII."
Bowman S., Churcher C.M., Badcock K., Brown D., Chillingworth T., Connor R., Dedman K., Devlin K., Gentles S., Hamlin N., Hunt S., Jagels K., Lye G., Moule S., Odell C., Pearson D., Rajandream M.A., Rice P. expand/collapse author list , Skelton J., Walsh S.V., Whitehead S., Barrell B.G.
Nature 387:90-93(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 204508 / S288c.
[3]Saccharomyces Genome Database
Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: ATCC 204508 / S288c.
[4]"The list of cytoplasmic ribosomal proteins of Saccharomyces cerevisiae."
Planta R.J., Mager W.H.
Yeast 14:471-477(1998) [PubMed] [Europe PMC] [Abstract]
Cited for: NOMENCLATURE, SUBUNIT.
[5]"Global analysis of protein localization in budding yeast."
Huh W.-K., Falvo J.V., Gerke L.C., Carroll A.S., Howson R.W., Weissman J.S., O'Shea E.K.
Nature 425:686-691(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
[6]"Global analysis of protein expression in yeast."
Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N., O'Shea E.K., Weissman J.S.
Nature 425:737-741(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
J01349 Genomic DNA. Translation: AAA88733.1.
Z46659 Genomic DNA. Translation: CAA86631.1.
BK006946 Genomic DNA. Translation: DAA09874.1.
PIRR5BY51. A02784.
RefSeqNP_013688.1. NM_001182382.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3IZBelectron microscopy-Q1-136[»]
3O2ZX-ray4.00K1-136[»]
3O30X-ray4.00K1-136[»]
3U5CX-ray3.00R1-136[»]
3U5GX-ray3.00R1-136[»]
4BYLelectron microscopy4.30R1-136[»]
4BYTelectron microscopy6.60R1-136[»]
ProteinModelPortalP02407.
SMRP02407. Positions 2-122.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

BioGrid35145. 72 interactions.
IntActP02407. 62 interactions.
MINTMINT-8285645.
STRING4932.YML024W.

Proteomic databases

PaxDbP02407.
PRIDEP02407.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblFungiYML024W; YML024W; YML024W.
GeneID854984.
KEGGsce:YML024W.

Organism-specific databases

CYGDYML024w.
SGDS000004486. RPS17A.

Phylogenomic databases

eggNOGCOG1383.
GeneTreeENSGT00390000006548.
HOGENOMHOG000227166.
KOK02962.
OMARERRMDY.
OrthoDBEOG7G4QT6.

Enzyme and pathway databases

BioCycYEAST:G3O-32626-MONOMER.

Gene expression databases

GenevestigatorP02407.

Family and domain databases

Gene3D1.10.60.20. 1 hit.
HAMAPMF_00511. Ribosomal_S17e.
InterProIPR001210. Ribosomal_S17e.
IPR018273. Ribosomal_S17e_CS.
[Graphical view]
PANTHERPTHR10732. PTHR10732. 1 hit.
PfamPF00833. Ribosomal_S17e. 1 hit.
[Graphical view]
SUPFAMSSF116820. SSF116820. 1 hit.
PROSITEPS00712. RIBOSOMAL_S17E. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio978109.

Entry information

Entry nameRS17A_YEAST
AccessionPrimary (citable) accession number: P02407
Secondary accession number(s): D6VZF0
Entry history
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: July 21, 1986
Last modified: February 19, 2014
This is version 118 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Relevant documents

Yeast chromosome XIII

Yeast (Saccharomyces cerevisiae) chromosome XIII: entries and gene names

Yeast

Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references