Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

P02407

- RS17A_YEAST

UniProt

P02407 - RS17A_YEAST

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

40S ribosomal protein S17-A

Gene

RPS17A

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. structural constituent of ribosome Source: SGD

GO - Biological processi

  1. cytoplasmic translation Source: SGD
  2. ribosomal small subunit assembly Source: SGD
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciYEAST:G3O-32626-MONOMER.
ReactomeiREACT_188965. SRP-dependent cotranslational protein targeting to membrane.
REACT_189050. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_189183. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_217188. Formation of a pool of free 40S subunits.

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S17-A
Alternative name(s):
RP51A
Gene namesi
Name:RPS17A
Synonyms:RP51A
Ordered Locus Names:YML024W
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome XIII

Organism-specific databases

CYGDiYML024w.
SGDiS000004486. RPS17A.

Subcellular locationi

Cytoplasm 1 Publication

GO - Cellular componenti

  1. cytosolic small ribosomal subunit Source: SGD
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 13613640S ribosomal protein S17-APRO_0000141546Add
BLAST

Proteomic databases

PaxDbiP02407.
PRIDEiP02407.

Expressioni

Gene expression databases

GenevestigatoriP02407.

Interactioni

Subunit structurei

Component of the small ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains 32 different proteins (encoded by 56 genes) and 1 molecule of RNA (18S). The 60S subunit contains 46 different proteins (encoded by 81 genes) and 3 molecules of RNA (25S, 5.8S and 5S).1 Publication

Protein-protein interaction databases

BioGridi35145. 73 interactions.
IntActiP02407. 62 interactions.
MINTiMINT-8285645.
STRINGi4932.YML024W.

Structurei

Secondary structure

1
136
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi7 – 2014
Turni21 – 233
Helixi28 – 3811
Beta strandi40 – 434
Helixi44 – 6118
Helixi73 – 797
Beta strandi97 – 993
Helixi104 – 11310

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VW9electron microscopy6.10S1-136[»]
1VWVelectron microscopy6.10S1-136[»]
1VXWelectron microscopy6.20R1-136[»]
1VXZelectron microscopy6.30R1-136[»]
3IZBelectron microscopy-Q1-136[»]
3O2ZX-ray4.00K1-136[»]
3O30X-ray4.00K1-136[»]
3U5CX-ray3.00R1-136[»]
3U5GX-ray3.00R1-136[»]
4BYLelectron microscopy4.30R1-136[»]
4BYTelectron microscopy6.60R1-136[»]
4CUYelectron microscopy3.70R2-125[»]
ProteinModelPortaliP02407.
SMRiP02407. Positions 2-122.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S17e family.Curated

Phylogenomic databases

eggNOGiCOG1383.
GeneTreeiENSGT00390000006548.
HOGENOMiHOG000227166.
InParanoidiP02407.
KOiK02962.
OMAiNKVAGFS.
OrthoDBiEOG7G4QT6.

Family and domain databases

Gene3Di1.10.60.20. 1 hit.
HAMAPiMF_00511. Ribosomal_S17e.
InterProiIPR001210. Ribosomal_S17e.
IPR018273. Ribosomal_S17e_CS.
[Graphical view]
PANTHERiPTHR10732. PTHR10732. 1 hit.
PfamiPF00833. Ribosomal_S17e. 1 hit.
[Graphical view]
SUPFAMiSSF116820. SSF116820. 1 hit.
PROSITEiPS00712. RIBOSOMAL_S17E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P02407-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MGRVRTKTVK RASKALIERY YPKLTLDFQT NKRLCDEIAT IQSKRLRNKI
60 70 80 90 100
AGYTTHLMKR IQKGPVRGIS FKLQEEERER KDQYVPEVSA LDLSRSNGVL
110 120 130
NVDNQTSDLV KSLGLKLPLS VINVSAQRDR RYRKRV
Length:136
Mass (Da):15,788
Last modified:July 21, 1986 - v1
Checksum:i956E5382870EA289
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
J01349 Genomic DNA. Translation: AAA88733.1.
Z46659 Genomic DNA. Translation: CAA86631.1.
BK006946 Genomic DNA. Translation: DAA09874.1.
PIRiA02784. R5BY51.
RefSeqiNP_013688.1. NM_001182382.1.

Genome annotation databases

EnsemblFungiiYML024W; YML024W; YML024W.
GeneIDi854984.
KEGGisce:YML024W.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
J01349 Genomic DNA. Translation: AAA88733.1 .
Z46659 Genomic DNA. Translation: CAA86631.1 .
BK006946 Genomic DNA. Translation: DAA09874.1 .
PIRi A02784. R5BY51.
RefSeqi NP_013688.1. NM_001182382.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VW9 electron microscopy 6.10 S 1-136 [» ]
1VWV electron microscopy 6.10 S 1-136 [» ]
1VXW electron microscopy 6.20 R 1-136 [» ]
1VXZ electron microscopy 6.30 R 1-136 [» ]
3IZB electron microscopy - Q 1-136 [» ]
3O2Z X-ray 4.00 K 1-136 [» ]
3O30 X-ray 4.00 K 1-136 [» ]
3U5C X-ray 3.00 R 1-136 [» ]
3U5G X-ray 3.00 R 1-136 [» ]
4BYL electron microscopy 4.30 R 1-136 [» ]
4BYT electron microscopy 6.60 R 1-136 [» ]
4CUY electron microscopy 3.70 R 2-125 [» ]
ProteinModelPortali P02407.
SMRi P02407. Positions 2-122.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 35145. 73 interactions.
IntActi P02407. 62 interactions.
MINTi MINT-8285645.
STRINGi 4932.YML024W.

Proteomic databases

PaxDbi P02407.
PRIDEi P02407.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii YML024W ; YML024W ; YML024W .
GeneIDi 854984.
KEGGi sce:YML024W.

Organism-specific databases

CYGDi YML024w.
SGDi S000004486. RPS17A.

Phylogenomic databases

eggNOGi COG1383.
GeneTreei ENSGT00390000006548.
HOGENOMi HOG000227166.
InParanoidi P02407.
KOi K02962.
OMAi NKVAGFS.
OrthoDBi EOG7G4QT6.

Enzyme and pathway databases

BioCyci YEAST:G3O-32626-MONOMER.
Reactomei REACT_188965. SRP-dependent cotranslational protein targeting to membrane.
REACT_189050. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_189183. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_217188. Formation of a pool of free 40S subunits.

Miscellaneous databases

NextBioi 978109.

Gene expression databases

Genevestigatori P02407.

Family and domain databases

Gene3Di 1.10.60.20. 1 hit.
HAMAPi MF_00511. Ribosomal_S17e.
InterProi IPR001210. Ribosomal_S17e.
IPR018273. Ribosomal_S17e_CS.
[Graphical view ]
PANTHERi PTHR10732. PTHR10732. 1 hit.
Pfami PF00833. Ribosomal_S17e. 1 hit.
[Graphical view ]
SUPFAMi SSF116820. SSF116820. 1 hit.
PROSITEi PS00712. RIBOSOMAL_S17E. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Expression of a beta-galactosidase gene containing the ribosomal protein 51 intron is sensitive to the rna2 mutation of yeast."
    Teem J.L., Rosbash M.
    Proc. Natl. Acad. Sci. U.S.A. 80:4403-4407(1983) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: RY26.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  3. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  4. "The list of cytoplasmic ribosomal proteins of Saccharomyces cerevisiae."
    Planta R.J., Mager W.H.
    Yeast 14:471-477(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NOMENCLATURE, SUBUNIT.
  5. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
  6. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiRS17A_YEAST
AccessioniPrimary (citable) accession number: P02407
Secondary accession number(s): D6VZF0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: July 21, 1986
Last modified: October 29, 2014
This is version 122 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 30900 molecules/cell in log phase SD medium.1 Publication
There are 2 genes for S17 in yeast.

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families
  4. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  5. Yeast chromosome XIII
    Yeast (Saccharomyces cerevisiae) chromosome XIII: entries and gene names

External Data

Dasty 3