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Protein

Protamine-like protein

Gene

tpr

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11016-MONOMER.
ECOL316407:JW1219-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protamine-like protein
Gene namesi
Name:tpr
Ordered Locus Names:b1229, JW1219
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11016. tpr.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 2929Protamine-like proteinPRO_0000097053Add
BLAST

Proteomic databases

PaxDbiP02338.

Interactioni

Protein-protein interaction databases

STRINGi511145.b1229.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000054855.

Sequencei

Sequence statusi: Complete.

P02338-1 [UniParc]FASTAAdd to basket

« Hide

        10         20 
MRSFDQGSTR APARERCRRQ RPEGRSAQR
Length:29
Mass (Da):3,447
Last modified:June 26, 2007 - v2
Checksum:i4B039533A2E99C77
GO

Sequence cautioni

The sequence AAA24670.1 differs from that shown. Reason: Erroneous initiation. Curated
The sequence BAA36099.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
K01197 Genomic DNA. Translation: AAA24670.1. Different initiation.
U00096 Genomic DNA. Translation: AAC74313.2.
AP009048 Genomic DNA. Translation: BAA36099.1. Different initiation.
PIRiA90813. WRECP1.
RefSeqiNP_415747.2. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAC74313; AAC74313; b1229.
BAA36099; BAA36099; BAA36099.
GeneIDi946224.
KEGGiecj:JW1219.
eco:b1229.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
K01197 Genomic DNA. Translation: AAA24670.1. Different initiation.
U00096 Genomic DNA. Translation: AAC74313.2.
AP009048 Genomic DNA. Translation: BAA36099.1. Different initiation.
PIRiA90813. WRECP1.
RefSeqiNP_415747.2. NC_000913.3.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi511145.b1229.

Proteomic databases

PaxDbiP02338.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74313; AAC74313; b1229.
BAA36099; BAA36099; BAA36099.
GeneIDi946224.
KEGGiecj:JW1219.
eco:b1229.

Organism-specific databases

EchoBASEiEB1009.
EcoGeneiEG11016. tpr.

Phylogenomic databases

HOGENOMiHOG000054855.

Enzyme and pathway databases

BioCyciEcoCyc:EG11016-MONOMER.
ECOL316407:JW1219-MONOMER.

Miscellaneous databases

PROiP02338.

Family and domain databases

ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The tyrT locus: termination and processing of a complex transcript."
    Rossi J., Egan J., Hudson L., Landy A.
    Cell 26:305-314(1981) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "An E. coli gene coding for a protamine-like protein."
    Altman S., Model P., Dixon G.H., Wosnick M.A.
    Cell 26:299-304(1981) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  5. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiPRTL_ECOLI
AccessioniPrimary (citable) accession number: P02338
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: June 26, 2007
Last modified: November 11, 2015
This is version 85 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.