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Protein

Globin

Gene
N/A
Organism
Lampetra fluviatilis (European river lamprey) (Petromyzon fluviatilis)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi74 – 741Iron (heme distal ligand)PROSITE-ProRule annotation
Metal bindingi106 – 1061Iron (heme proximal ligand)

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

Oxygen transport, Transport

Keywords - Ligandi

Heme, Iron, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Globin
OrganismiLampetra fluviatilis (European river lamprey) (Petromyzon fluviatilis)
Taxonomic identifieri7748 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataCyclostomataHyperoartiaPetromyzontiformesPetromyzontidaeLampetra

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemovedBy similarity
Chaini2 – 150149GlobinPRO_0000052525Add
BLAST

Interactioni

Subunit structurei

Monomer.1 Publication

Structurei

Secondary structure

1
150
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi5 – 73Combined sources
Helixi14 – 2815Combined sources
Helixi31 – 4515Combined sources
Helixi47 – 493Combined sources
Helixi54 – 563Combined sources
Helixi62 – 676Combined sources
Helixi69 – 8618Combined sources
Turni87 – 904Combined sources
Helixi92 – 10817Combined sources
Helixi117 – 12913Combined sources
Helixi133 – 14513Combined sources
Turni146 – 1494Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1UC3X-ray2.30A/B/C/D/E/F/G/H/I/J/K/L2-150[»]
ProteinModelPortaliP02207.
SMRiP02207. Positions 2-150.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP02207.

Family & Domainsi

Sequence similaritiesi

Belongs to the globin family.PROSITE-ProRule annotation

Phylogenomic databases

HOVERGENiHBG098500.

Family and domain databases

Gene3Di1.10.490.10. 1 hit.
InterProiIPR000971. Globin.
IPR009050. Globin-like.
IPR012292. Globin/Proto.
IPR013314. Globin_lamprey/hagfish.
[Graphical view]
PfamiPF00042. Globin. 1 hit.
[Graphical view]
PRINTSiPR01906. FISHGLOBIN.
SUPFAMiSSF46458. SSF46458. 1 hit.
PROSITEiPS01033. GLOBIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P02207-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPIVDSGSVA PLSAAEKTKI RSAWAPVYSN YETSGVDILV KFFTSTPAAQ
60 70 80 90 100
EFFPKFKGMT SADQLKKSAD VRWHAERIIN AVNDAVASMD DTEKMSMKLR
110 120 130 140 150
DLSGKHAKSF QVDPQYFKVL AAVIADTVAA GDAGFEKLMS MICILLRSAY
Length:150
Mass (Da):16,404
Last modified:January 23, 2007 - v2
Checksum:i4283FAB47706A0EC
GO

Sequence databases

PIRiA02528. GGLMF.

Cross-referencesi

Sequence databases

PIRiA02528. GGLMF.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1UC3X-ray2.30A/B/C/D/E/F/G/H/I/J/K/L2-150[»]
ProteinModelPortaliP02207.
SMRiP02207. Positions 2-150.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

HOVERGENiHBG098500.

Miscellaneous databases

EvolutionaryTraceiP02207.

Family and domain databases

Gene3Di1.10.490.10. 1 hit.
InterProiIPR000971. Globin.
IPR009050. Globin-like.
IPR012292. Globin/Proto.
IPR013314. Globin_lamprey/hagfish.
[Graphical view]
PfamiPF00042. Globin. 1 hit.
[Graphical view]
PRINTSiPR01906. FISHGLOBIN.
SUPFAMiSSF46458. SSF46458. 1 hit.
PROSITEiPS01033. GLOBIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Hemoglobins, XXX. The amino acid sequence of the monomeric hemoglobin from Lampetra fluviatilis."
    Zelenik M., Rudloff V., Braunitzer G.
    Hoppe-Seyler's Z. Physiol. Chem. 360:1879-1894(1979) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 2-150.
  2. "Crystal structure analysis of river lamprey hemoglobin I."
    Seki M., Yao M., Yazawa Y., Tanaka I.
    Submitted (APR-2003) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.30 ANGSTROMS) IN COMPLEX WITH HEME.

Entry informationi

Entry nameiGLB_LAMFL
AccessioniPrimary (citable) accession number: P02207
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: January 23, 2007
Last modified: December 9, 2015
This is version 84 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Direct protein sequencing

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.