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Protein

Ig gamma-2A chain C region, membrane-bound form

Gene

Igh-1a

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Ig gamma-2A chain C region, membrane-bound form
Gene namesi
Name:Igh-1a
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589 Componenti: Unplaced

Organism-specific databases

MGIiMGI:96443. Igh-1a.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei345 – 36218HelicalSequence AnalysisAdd
BLAST
Topological domaini363 – 39836CytoplasmicSequence AnalysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini‹1 – 398›398Ig gamma-2A chain C region, membrane-bound formPRO_0000153586Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi14 – 14Interchain (with a light chain)
Disulfide bondi26 ↔ 81
Disulfide bondi106 – 106Interchain (with a heavy chain)
Disulfide bondi109 – 109Interchain (with a heavy chain)
Disulfide bondi111 – 111Interchain (with a heavy chain)
Disulfide bondi143 ↔ 203
Glycosylationi179 – 1791N-linked (GlcNAc...)1 Publication
Disulfide bondi249 ↔ 307

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

MaxQBiP01865.
PRIDEiP01865.

Interactioni

Protein-protein interaction databases

IntActiP01865. 2 interactions.
MINTiMINT-132839.

Structurei

Secondary structure

1
398
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi6 – 105Combined sources
Helixi14 – 163Combined sources
Beta strandi17 – 3418Combined sources
Beta strandi37 – 404Combined sources
Helixi41 – 433Combined sources
Beta strandi49 – 513Combined sources
Beta strandi55 – 573Combined sources
Beta strandi60 – 7011Combined sources
Helixi71 – 733Combined sources
Turni74 – 763Combined sources
Beta strandi80 – 856Combined sources
Helixi86 – 883Combined sources
Beta strandi90 – 956Combined sources
Beta strandi101 – 1033Combined sources
Beta strandi113 – 1175Combined sources
Beta strandi126 – 1305Combined sources
Beta strandi140 – 15415Combined sources
Beta strandi157 – 1604Combined sources
Turni161 – 1644Combined sources
Beta strandi169 – 1713Combined sources
Beta strandi181 – 19010Combined sources
Helixi191 – 1933Combined sources
Turni194 – 1963Combined sources
Beta strandi200 – 2056Combined sources
Turni206 – 2094Combined sources
Beta strandi210 – 2156Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1AXTX-ray2.15H1-99[»]
1EGJX-ray2.80H1-218[»]
1FLRX-ray1.85H1-100[»]
1FPTX-ray3.00H1-99[»]
1GGBX-ray2.80H1-99[»]
1GGCX-ray2.80H1-99[»]
1KB5X-ray2.50H1-99[»]
1LO0X-ray2.00H/Y1-101[»]
1NBYX-ray1.80B1-96[»]
1NCAX-ray2.50H1-100[»]
1NCBX-ray2.50H1-100[»]
1NCCX-ray2.50H1-100[»]
1NCDX-ray2.90H1-100[»]
1ND0X-ray2.45B/D/F/H1-102[»]
1NDGX-ray1.90B1-96[»]
1NDMX-ray2.10B1-96[»]
1ORQX-ray3.20B1-99[»]
1PLGX-ray2.80H1-97[»]
1RU9X-ray2.50H1-102[»]
1RUAX-ray1.75H1-102[»]
1RUKX-ray1.40H1-102[»]
1RULX-ray1.88H1-102[»]
1RUMX-ray1.48H1-102[»]
1RUPX-ray1.40H1-102[»]
1YEEX-ray2.20H1-98[»]
4FABX-ray2.70H1-97[»]
ProteinModelPortaliP01865.
SMRiP01865. Positions 1-325.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP01865.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini5 – 9793Ig-like 1Add
BLAST
Domaini120 – 219100Ig-like 2Add
BLAST
Domaini228 – 32497Ig-like 3Add
BLAST

Sequence similaritiesi

Keywords - Domaini

Immunoglobulin C region, Immunoglobulin domain, Repeat, Transmembrane, Transmembrane helix

Phylogenomic databases

HOVERGENiHBG005814.
InParanoidiP01865.

Family and domain databases

Gene3Di2.60.40.10. 3 hits.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003006. Ig/MHC_CS.
IPR003597. Ig_C1-set.
[Graphical view]
PfamiPF07654. C1-set. 3 hits.
[Graphical view]
SMARTiSM00407. IGc1. 2 hits.
[Graphical view]
PROSITEiPS50835. IG_LIKE. 3 hits.
PS00290. IG_MHC. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform Membrane-bound (identifier: P01865-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
KTTAPSVYPL APVCGDTTGS SVTLGCLVKG YFPEPVTLTW NSGSLSSGVH
60 70 80 90 100
TFPAVLQSDL YTLSSSVTVT SSTWPSQSIT CNVAHPASST KVDKKIEPRG
110 120 130 140 150
PTIKPCPPCK CPAPNLLGGP SVFIFPPKIK DVLMISLSPI VTCVVVDVSE
160 170 180 190 200
DDPDVQISWF VNNVEVHTAQ TQTHREDYNS TLRVVSALPI QHQDWMSGKE
210 220 230 240 250
FKCKVNNKDL PAPIERTISK PKGSVRAPQV YVLPPPEEEM TKKQVTLTCM
260 270 280 290 300
VTDFMPEDIY VEWTNNGKTE LNYKNTEPVL DSDGSYFMYS KLRVEKKNWV
310 320 330 340 350
ERNSYSCSVV HEGLHNHHTT KSFSRTPGLD LDDVCAEAQD GELDGLWTTI
360 370 380 390
TIFISLFLLS VCYSASVTLF KVKWIFSSVV ELKQTISPDY RNMIGQGA
Length:398
Mass (Da):43,949
Last modified:February 1, 2005 - v3
Checksum:iB9CE2EE11224D13B
GO
Isoform Secreted (identifier: P01864-1) [UniParc]FASTAAdd to basket

The sequence of this isoform can be found in the external entry P01864.
Isoforms of the same protein are often annotated in two different entries if their sequences differ significantly.
Note: Probably the major isoform.
Length:335
Mass (Da):36,596
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J00470, J00471 Genomic DNA. Translation: AAB59661.1.
M35032 Genomic DNA. Translation: AAA37919.1.
PIRiA02154. G2MSAM.
UniGeneiMm.342177.
Mm.436014.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J00470, J00471 Genomic DNA. Translation: AAB59661.1.
M35032 Genomic DNA. Translation: AAA37919.1.
PIRiA02154. G2MSAM.
UniGeneiMm.342177.
Mm.436014.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1AXTX-ray2.15H1-99[»]
1EGJX-ray2.80H1-218[»]
1FLRX-ray1.85H1-100[»]
1FPTX-ray3.00H1-99[»]
1GGBX-ray2.80H1-99[»]
1GGCX-ray2.80H1-99[»]
1KB5X-ray2.50H1-99[»]
1LO0X-ray2.00H/Y1-101[»]
1NBYX-ray1.80B1-96[»]
1NCAX-ray2.50H1-100[»]
1NCBX-ray2.50H1-100[»]
1NCCX-ray2.50H1-100[»]
1NCDX-ray2.90H1-100[»]
1ND0X-ray2.45B/D/F/H1-102[»]
1NDGX-ray1.90B1-96[»]
1NDMX-ray2.10B1-96[»]
1ORQX-ray3.20B1-99[»]
1PLGX-ray2.80H1-97[»]
1RU9X-ray2.50H1-102[»]
1RUAX-ray1.75H1-102[»]
1RUKX-ray1.40H1-102[»]
1RULX-ray1.88H1-102[»]
1RUMX-ray1.48H1-102[»]
1RUPX-ray1.40H1-102[»]
1YEEX-ray2.20H1-98[»]
4FABX-ray2.70H1-97[»]
ProteinModelPortaliP01865.
SMRiP01865. Positions 1-325.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP01865. 2 interactions.
MINTiMINT-132839.

Protein family/group databases

IMGTiSearch...
Search...
Search...

Proteomic databases

MaxQBiP01865.
PRIDEiP01865.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

MGIiMGI:96443. Igh-1a.

Phylogenomic databases

HOVERGENiHBG005814.
InParanoidiP01865.

Miscellaneous databases

EvolutionaryTraceiP01865.
PROiP01865.
SOURCEiSearch...

Family and domain databases

Gene3Di2.60.40.10. 3 hits.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003006. Ig/MHC_CS.
IPR003597. Ig_C1-set.
[Graphical view]
PfamiPF07654. C1-set. 3 hits.
[Graphical view]
SMARTiSM00407. IGc1. 2 hits.
[Graphical view]
PROSITEiPS50835. IG_LIKE. 3 hits.
PS00290. IG_MHC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The complete nucleotide sequence of mouse immunoglobin gamma 2a gene and evolution of heavy chain genes: further evidence for intervening sequence-mediated domain transfer."
    Yamawaki-Kataoka Y., Miyata T., Honjo T.
    Nucleic Acids Res. 9:1365-1381(1981) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Nucleotide sequences of gene segments encoding membrane domains of immunoglobulin gamma chains."
    Yamawaki-Kataoka Y., Nakai S., Miyata T., Honjo T.
    Proc. Natl. Acad. Sci. U.S.A. 79:2623-2627(1982) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 329-398.
  3. "Sequence and polyadenylation site determination of the murine immunoglobulin gamma 2a membrane 3' untranslated region."
    Hall B., Milcarek C.
    Mol. Immunol. 26:819-826(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 372-398.
  4. "Enhanced analysis of the mouse plasma proteome using cysteine-containing tryptic glycopeptides."
    Bernhard O.K., Kapp E.A., Simpson R.J.
    J. Proteome Res. 6:987-995(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: GLYCOSYLATION [LARGE SCALE ANALYSIS] AT ASN-179.
    Strain: C57BL/6.
    Tissue: Plasma.

Entry informationi

Entry nameiGCAM_MOUSE
AccessioniPrimary (citable) accession number: P01865
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: February 1, 2005
Last modified: June 24, 2015
This is version 124 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.