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Protein

Ig kappa chain C region, B allele

Gene
N/A
Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Ig kappa chain C region, B allele
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Unplaced

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_0000153605‹1 – 106Ig kappa chain C region, B alleleAdd BLAST›106

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi26 ↔ 86
Disulfide bondi106Interchain (with a heavy chain)

Keywords - PTMi

Disulfide bond

Proteomic databases

PaxDbiP01835.
PRIDEiP01835.

Expressioni

Gene expression databases

BgeeiENSRNOG00000049829.
GenevisibleiP01835. RN.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000066644.

Structurei

Secondary structure

1106
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi6 – 10Combined sources5
Helixi14 – 17Combined sources4
Turni18 – 20Combined sources3
Beta strandi21 – 34Combined sources14
Beta strandi37 – 42Combined sources6
Beta strandi45 – 47Combined sources3
Beta strandi51 – 55Combined sources5
Turni60 – 62Combined sources3
Beta strandi65 – 74Combined sources10
Helixi75 – 79Combined sources5
Beta strandi83 – 89Combined sources7
Turni91 – 93Combined sources3
Beta strandi94 – 96Combined sources3
Beta strandi97 – 102Combined sources6

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1BFOX-ray2.60A/C/E/G1-106[»]
1C5DX-ray2.40A/L1-106[»]
1FN4X-ray2.80A/C4-106[»]
1LK3X-ray1.91L/M1-103[»]
4UAOX-ray3.10B1-106[»]
ProteinModelPortaliP01835.
SMRiP01835.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP01835.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 102Ig-likeAdd BLAST98

Sequence similaritiesi

Keywords - Domaini

Immunoglobulin C region, Immunoglobulin domain

Phylogenomic databases

eggNOGiENOG410J107. Eukaryota.
ENOG41115Q6. LUCA.
HOVERGENiHBG039526.
InParanoidiP01835.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003006. Ig/MHC_CS.
IPR003597. Ig_C1-set.
[Graphical view]
PfamiPF07654. C1-set. 1 hit.
[Graphical view]
SMARTiSM00407. IGc1. 1 hit.
[Graphical view]
SUPFAMiSSF48726. SSF48726. 1 hit.
PROSITEiPS50835. IG_LIKE. 1 hit.
PS00290. IG_MHC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P01835-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
ADAAPTVSIF PPSTEQLATG GASVVCLMNN FYPRDISVKW KIDGTERRDG
60 70 80 90 100
VLDSVTDQDS KDSTYSMSST LSLTKADYES HNLYTCEVVH KTSSSPVVKS

FNRNEC
Length:106
Mass (Da):11,601
Last modified:July 21, 1986 - v1
Checksum:i4CFA7CA820D1CA36
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei11
Sequence conflicti2D → N AA sequence (PubMed:807630).Curated1
Sequence conflicti30N → K AA sequence (PubMed:807630).Curated1
Sequence conflicti48Missing AA sequence (PubMed:807630).Curated1
Sequence conflicti79E → Q AA sequence (PubMed:807630).Curated1
Sequence conflicti87E → Q AA sequence (PubMed:807630).Curated1
Sequence conflicti98V → VW AA sequence (PubMed:807630).Curated1
Sequence conflicti100S → N AA sequence (PubMed:807630).Curated1

Sequence databases

PIRiA93901. K1RTB.
UniGeneiRn.126980.

Cross-referencesi

Sequence databases

PIRiA93901. K1RTB.
UniGeneiRn.126980.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1BFOX-ray2.60A/C/E/G1-106[»]
1C5DX-ray2.40A/L1-106[»]
1FN4X-ray2.80A/C4-106[»]
1LK3X-ray1.91L/M1-103[»]
4UAOX-ray3.10B1-106[»]
ProteinModelPortaliP01835.
SMRiP01835.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000066644.

Proteomic databases

PaxDbiP01835.
PRIDEiP01835.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG410J107. Eukaryota.
ENOG41115Q6. LUCA.
HOVERGENiHBG039526.
InParanoidiP01835.

Miscellaneous databases

EvolutionaryTraceiP01835.

Gene expression databases

BgeeiENSRNOG00000049829.
GenevisibleiP01835. RN.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003006. Ig/MHC_CS.
IPR003597. Ig_C1-set.
[Graphical view]
PfamiPF07654. C1-set. 1 hit.
[Graphical view]
SMARTiSM00407. IGc1. 1 hit.
[Graphical view]
SUPFAMiSSF48726. SSF48726. 1 hit.
PROSITEiPS50835. IG_LIKE. 1 hit.
PS00290. IG_MHC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiKACB_RAT
AccessioniPrimary (citable) accession number: P01835
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: July 21, 1986
Last modified: November 2, 2016
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.