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Protein

Ig kappa chain C region, B allele

Gene
N/A
Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Ig kappa chain C region, B allele
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Unplaced

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini‹1 – 106›106Ig kappa chain C region, B allelePRO_0000153605Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi26 ↔ 86
Disulfide bondi106 – 106Interchain (with a heavy chain)

Keywords - PTMi

Disulfide bond

Proteomic databases

PaxDbiP01835.
PRIDEiP01835.

Expressioni

Gene expression databases

GenevisibleiP01835. RN.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000066644.

Structurei

Secondary structure

1
106
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi6 – 105Combined sources
Helixi14 – 174Combined sources
Turni18 – 203Combined sources
Beta strandi21 – 3414Combined sources
Beta strandi37 – 426Combined sources
Beta strandi45 – 473Combined sources
Beta strandi51 – 555Combined sources
Turni60 – 623Combined sources
Beta strandi65 – 7410Combined sources
Helixi75 – 795Combined sources
Beta strandi83 – 897Combined sources
Turni91 – 933Combined sources
Beta strandi94 – 963Combined sources
Beta strandi97 – 1026Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1BFOX-ray2.60A/C/E/G1-106[»]
1C5DX-ray2.40A/L1-106[»]
1FN4X-ray2.80A/C4-106[»]
1LK3X-ray1.91L/M1-103[»]
4UAOX-ray3.10B1-106[»]
ProteinModelPortaliP01835.
SMRiP01835. Positions 1-106.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP01835.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini5 – 10298Ig-likeAdd
BLAST

Sequence similaritiesi

Keywords - Domaini

Immunoglobulin C region, Immunoglobulin domain

Phylogenomic databases

eggNOGiENOG410J107. Eukaryota.
ENOG41115Q6. LUCA.
HOVERGENiHBG039526.
InParanoidiP01835.
OMAiKSFNRNE.
OrthoDBiEOG776SSB.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003006. Ig/MHC_CS.
IPR003597. Ig_C1-set.
[Graphical view]
PfamiPF07654. C1-set. 1 hit.
[Graphical view]
SMARTiSM00407. IGc1. 1 hit.
[Graphical view]
SUPFAMiSSF48726. SSF48726. 1 hit.
PROSITEiPS50835. IG_LIKE. 1 hit.
PS00290. IG_MHC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P01835-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
ADAAPTVSIF PPSTEQLATG GASVVCLMNN FYPRDISVKW KIDGTERRDG
60 70 80 90 100
VLDSVTDQDS KDSTYSMSST LSLTKADYES HNLYTCEVVH KTSSSPVVKS

FNRNEC
Length:106
Mass (Da):11,601
Last modified:July 21, 1986 - v1
Checksum:i4CFA7CA820D1CA36
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11
Sequence conflicti2 – 21D → N AA sequence (PubMed:807630).Curated
Sequence conflicti30 – 301N → K AA sequence (PubMed:807630).Curated
Sequence conflicti48 – 481Missing AA sequence (PubMed:807630).Curated
Sequence conflicti79 – 791E → Q AA sequence (PubMed:807630).Curated
Sequence conflicti87 – 871E → Q AA sequence (PubMed:807630).Curated
Sequence conflicti98 – 981V → VW AA sequence (PubMed:807630).Curated
Sequence conflicti100 – 1001S → N AA sequence (PubMed:807630).Curated

Sequence databases

PIRiA93901. K1RTB.
UniGeneiRn.126980.

Cross-referencesi

Sequence databases

PIRiA93901. K1RTB.
UniGeneiRn.126980.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1BFOX-ray2.60A/C/E/G1-106[»]
1C5DX-ray2.40A/L1-106[»]
1FN4X-ray2.80A/C4-106[»]
1LK3X-ray1.91L/M1-103[»]
4UAOX-ray3.10B1-106[»]
ProteinModelPortaliP01835.
SMRiP01835. Positions 1-106.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000066644.

Proteomic databases

PaxDbiP01835.
PRIDEiP01835.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG410J107. Eukaryota.
ENOG41115Q6. LUCA.
HOVERGENiHBG039526.
InParanoidiP01835.
OMAiKSFNRNE.
OrthoDBiEOG776SSB.

Miscellaneous databases

EvolutionaryTraceiP01835.

Gene expression databases

GenevisibleiP01835. RN.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003006. Ig/MHC_CS.
IPR003597. Ig_C1-set.
[Graphical view]
PfamiPF07654. C1-set. 1 hit.
[Graphical view]
SMARTiSM00407. IGc1. 1 hit.
[Graphical view]
SUPFAMiSSF48726. SSF48726. 1 hit.
PROSITEiPS50835. IG_LIKE. 1 hit.
PS00290. IG_MHC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Allelic forms of rat kappa chain genes: evidence for strong selection at the level of nucleotide sequence."
    Sheppard H.W., Gutman G.A.
    Proc. Natl. Acad. Sci. U.S.A. 78:7064-7068(1981) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Louvain.
  2. "The primary structure of a rat kappa Bence Jones protein: phylogenetic relationships of V- and C-region genes."
    Starace V., Querinjean P.
    J. Immunol. 115:59-62(1975) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE (BENCE-JONES PROTEIN S211).

Entry informationi

Entry nameiKACB_RAT
AccessioniPrimary (citable) accession number: P01835
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: July 21, 1986
Last modified: February 17, 2016
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.