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Protein

Ig heavy chain V region T601

Gene
N/A
Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Ig heavy chain V region T601
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Unplaced

Organism-specific databases

MGIiMGI:96461. Igh-J.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000598911 – ›119Ig heavy chain V region T601Add BLAST›119

Proteomic databases

MaxQBiP01808.
PRIDEiP01808.

Interactioni

GO - Molecular functioni

Structurei

Secondary structure

1119
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi3 – 7Combined sources5
Beta strandi10 – 12Combined sources3
Beta strandi18 – 27Combined sources10
Helixi29 – 31Combined sources3
Beta strandi34 – 39Combined sources6
Beta strandi45 – 51Combined sources7
Beta strandi58 – 60Combined sources3
Helixi62 – 64Combined sources3
Turni65 – 67Combined sources3
Beta strandi68 – 73Combined sources6
Helixi74 – 76Combined sources3
Beta strandi78 – 83Combined sources6
Helixi88 – 90Combined sources3
Beta strandi92 – 98Combined sources7
Beta strandi104 – 108Combined sources5
Beta strandi112 – 116Combined sources5

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1OTSX-ray2.51C/E1-118[»]
1OTTX-ray3.00C/E1-118[»]
1OTUX-ray3.30C/E1-118[»]
2EXWX-ray3.20C/E1-118[»]
2EXYX-ray3.10C/E1-118[»]
2EZ0X-ray3.54C/E1-118[»]
2H2PX-ray3.10C/E2-118[»]
2H2SX-ray3.10C/E2-118[»]
2HLFX-ray3.30C/E2-118[»]
2HT2X-ray3.32C/E2-118[»]
2HT3X-ray3.30C/E2-118[»]
2HT4X-ray3.20C/E2-118[»]
2HTKX-ray3.41C/E2-118[»]
2HTLX-ray3.40C/E2-118[»]
3DETX-ray2.80C/E2-118[»]
3EJYX-ray3.20C/E2-118[»]
3EJZX-ray2.90C/E2-118[»]
3U0WX-ray2.00H1-98[»]
4KKBX-ray3.02C/E1-118[»]
4MQXX-ray3.52C/E1-118[»]
ProteinModelPortaliP01808.
SMRiP01808.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP01808.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 112Ig-likeAdd BLAST112

Sequence similaritiesi

Keywords - Domaini

Immunoglobulin domain, Immunoglobulin V region

Phylogenomic databases

HOVERGENiHBG018013.
InParanoidiP01808.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003599. Ig_sub.
IPR013106. Ig_V-set.
[Graphical view]
PfamiPF07686. V-set. 1 hit.
[Graphical view]
SMARTiSM00409. IG. 1 hit.
SM00406. IGv. 1 hit.
[Graphical view]
SUPFAMiSSF48726. SSF48726. 1 hit.
PROSITEiPS50835. IG_LIKE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P01808-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
EVKLLESGGG LVQPGGSLKL SCAASGFDFS RYWMSWVRQA PGKGLEWIGE
60 70 80 90 100
INPDSSTINY TPSLKDKFII SRDNAKNTLY LQMSKVRSED TALYYCARLG
110
YYGYFDVWGA GTTVTVSSE
Length:119
Mass (Da):13,169
Last modified:July 21, 1986 - v1
Checksum:iBC38CC84E6EA00E8
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1191

Sequence databases

PIRiA02078. AVMST6.

Cross-referencesi

Sequence databases

PIRiA02078. AVMST6.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1OTSX-ray2.51C/E1-118[»]
1OTTX-ray3.00C/E1-118[»]
1OTUX-ray3.30C/E1-118[»]
2EXWX-ray3.20C/E1-118[»]
2EXYX-ray3.10C/E1-118[»]
2EZ0X-ray3.54C/E1-118[»]
2H2PX-ray3.10C/E2-118[»]
2H2SX-ray3.10C/E2-118[»]
2HLFX-ray3.30C/E2-118[»]
2HT2X-ray3.32C/E2-118[»]
2HT3X-ray3.30C/E2-118[»]
2HT4X-ray3.20C/E2-118[»]
2HTKX-ray3.41C/E2-118[»]
2HTLX-ray3.40C/E2-118[»]
3DETX-ray2.80C/E2-118[»]
3EJYX-ray3.20C/E2-118[»]
3EJZX-ray2.90C/E2-118[»]
3U0WX-ray2.00H1-98[»]
4KKBX-ray3.02C/E1-118[»]
4MQXX-ray3.52C/E1-118[»]
ProteinModelPortaliP01808.
SMRiP01808.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

MaxQBiP01808.
PRIDEiP01808.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

MGIiMGI:96461. Igh-J.

Phylogenomic databases

HOVERGENiHBG018013.
InParanoidiP01808.

Miscellaneous databases

EvolutionaryTraceiP01808.
PROiP01808.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003599. Ig_sub.
IPR013106. Ig_V-set.
[Graphical view]
PfamiPF07686. V-set. 1 hit.
[Graphical view]
SMARTiSM00409. IG. 1 hit.
SM00406. IGv. 1 hit.
[Graphical view]
SUPFAMiSSF48726. SSF48726. 1 hit.
PROSITEiPS50835. IG_LIKE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiHVM38_MOUSE
AccessioniPrimary (citable) accession number: P01808
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: July 21, 1986
Last modified: November 2, 2016
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Miscellaneous

This chain was isolated from an IgA myeloma protein that binds galactan.

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.