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Protein

T-cell receptor alpha chain V region PHDS58

Gene
N/A
Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Keywords - Molecular functioni

Receptor

Names & Taxonomyi

Protein namesi
Recommended name:
T-cell receptor alpha chain V region PHDS58
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Unplaced

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 20Add BLAST20
ChainiPRO_000003359121 – 130T-cell receptor alpha chain V region PHDS58Add BLAST110

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi90N-linked (GlcNAc...)1

Keywords - PTMi

Glycoprotein

Proteomic databases

PRIDEiP01738.

Interactioni

Protein-protein interaction databases

MINTiMINT-1520010.

Structurei

Secondary structure

1130
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi22 – 24Combined sources3
Beta strandi28 – 33Combined sources6
Beta strandi38 – 40Combined sources3
Beta strandi43 – 45Combined sources3
Beta strandi52 – 57Combined sources6
Beta strandi59 – 61Combined sources3
Beta strandi64 – 69Combined sources6
Beta strandi74 – 77Combined sources4
Helixi79 – 81Combined sources3
Beta strandi82 – 87Combined sources6
Turni88 – 91Combined sources4
Beta strandi92 – 99Combined sources8
Helixi102 – 104Combined sources3
Beta strandi106 – 113Combined sources8
Helixi115 – 117Combined sources3
Beta strandi119 – 121Combined sources3
Beta strandi125 – 130Combined sources6

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1G6RX-ray2.80A/C21-130[»]
1I9EX-ray2.50A21-130[»]
1MWAX-ray2.40A/C21-130[»]
1TCRX-ray2.50A21-130[»]
2CKBX-ray3.00A/C21-130[»]
2ICWX-ray2.41I/K21-130[»]
2OI9X-ray2.35B21-130[»]
3E2HX-ray3.80B22-130[»]
3E3QX-ray2.95C/D/I/M/R/V/Z/d22-130[»]
4MVBX-ray3.09C20-129[»]
4MXQX-ray2.60C20-113[»]
4N0CX-ray2.90C/G20-129[»]
4N5EX-ray3.06C20-113[»]
4NHUX-ray2.90A/C21-130[»]
ProteinModelPortaliP01738.
SMRiP01738.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP01738.

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni21 – 114V segmentAdd BLAST94
Regioni115 – 130J segmentAdd BLAST16

Keywords - Domaini

Immunoglobulin domain, Signal

Phylogenomic databases

HOGENOMiHOG000294099.
HOVERGENiHBG105972.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003599. Ig_sub.
IPR013106. Ig_V-set.
[Graphical view]
PfamiPF07686. V-set. 1 hit.
[Graphical view]
SMARTiSM00409. IG. 1 hit.
SM00406. IGv. 1 hit.
[Graphical view]
SUPFAMiSSF48726. SSF48726. 1 hit.
PROSITEiPS50835. IG_LIKE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P01738-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLLALLPVLG IHFVLRDAQA QSVTQPDARV TVSEGASLQL RCKYSYSATP
60 70 80 90 100
YLFWYVQYPR QGLQLLLKYY SGDPVVQGVN GFEAEFSKSN SSFHLRKASV
110 120 130
HWSDSAVYFC AVSGFASALT FGSGTKVIVL
Length:130
Mass (Da):14,320
Last modified:July 21, 1986 - v1
Checksum:i19E638A8EEBFA635
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1301

Sequence databases

PIRiA02012. RWMS58.
UniGeneiMm.446617.
Mm.453040.

Cross-referencesi

Sequence databases

PIRiA02012. RWMS58.
UniGeneiMm.446617.
Mm.453040.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1G6RX-ray2.80A/C21-130[»]
1I9EX-ray2.50A21-130[»]
1MWAX-ray2.40A/C21-130[»]
1TCRX-ray2.50A21-130[»]
2CKBX-ray3.00A/C21-130[»]
2ICWX-ray2.41I/K21-130[»]
2OI9X-ray2.35B21-130[»]
3E2HX-ray3.80B22-130[»]
3E3QX-ray2.95C/D/I/M/R/V/Z/d22-130[»]
4MVBX-ray3.09C20-129[»]
4MXQX-ray2.60C20-113[»]
4N0CX-ray2.90C/G20-129[»]
4N5EX-ray3.06C20-113[»]
4NHUX-ray2.90A/C21-130[»]
ProteinModelPortaliP01738.
SMRiP01738.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

MINTiMINT-1520010.

Proteomic databases

PRIDEiP01738.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

HOGENOMiHOG000294099.
HOVERGENiHBG105972.

Miscellaneous databases

EvolutionaryTraceiP01738.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003599. Ig_sub.
IPR013106. Ig_V-set.
[Graphical view]
PfamiPF07686. V-set. 1 hit.
[Graphical view]
SMARTiSM00409. IG. 1 hit.
SM00406. IGv. 1 hit.
[Graphical view]
SUPFAMiSSF48726. SSF48726. 1 hit.
PROSITEiPS50835. IG_LIKE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiTVA1_MOUSE
AccessioniPrimary (citable) accession number: P01738
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: July 21, 1986
Last modified: November 2, 2016
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Miscellaneous

This clone was isolated from a cytotoxic T lymphocyte.

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.