P01034 (CYTC_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 145.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Cystatin-C Alternative name(s): Cystatin-3 Gamma-trace Neuroendocrine basic polypeptide Post-gamma-globulin | ||
| Gene names |
| ||
| Organism | Homo sapiens (Human) | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 146 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | As an inhibitor of cysteine proteinases, this protein is thought to serve an important physiological role as a local regulator of this enzyme activity. |
| Subunit structure | Homodimer. |
| Subcellular location | |
| Tissue specificity | Expressed in submandibular and sublingual saliva but not in parotid saliva (at protein level). Expressed in various body fluids, such as the cerebrospinal fluid and plasma. Expressed in highest levels in the epididymis, vas deferens, brain, thymus, and ovary and the lowest in the submandibular gland. Ref.16 Ref.19 |
| Post-translational modification | The Thr-25 variant is O-glycosylated with a core 1 or possibly core 8 glycan. The signal peptide of the O-glycosylated Thr-25 variant is cleaved between Ala-20 and Val-21. Ref.18 |
| Involvement in disease | Defects in CST3 are the cause of amyloidosis type 6 (AMYL6) [MIM:105150]; also known as hereditary cerebral hemorrhage with amyloidosis (HCHWA), cerebral amyloid angiopathy (CAA) or cerebroarterial amyloidosis Icelandic type. AMYL6 is a hereditary generalized amyloidosis due to cystatin C amyloid deposition. Cystatin C amyloid accumulates in the walls of arteries, arterioles, and sometimes capillaries and veins of the brain, and in various organs including lymphoid tissue, spleen, salivary glands, and seminal vesicles. Amyloid deposition in the cerebral vessels results in cerebral amyloid angiopathy, cerebral hemorrhage and premature stroke. Cystatin C levels in the cerebrospinal fluid are abnormally low. Ref.3 Ref.22 Genetic variations in CST3 are associated with age-related macular degeneration type 11 (ARMD11) [MIM:611953]. ARMD is a multifactorial eye disease and the most common cause of irreversible vision loss in the developed world. In most patients, the disease is manifest as ophthalmoscopically visible yellowish accumulations of protein and lipid that lie beneath the retinal pigment epithelium and within an elastin-containing structure known as Bruch membrane. Ref.23 |
| Miscellaneous | Potential cerebrospinal fluid marker for the diagnosis of Creutzfeldt-Jakob disease. |
| Sequence similarities | Belongs to the cystatin family. |
| Mass spectrometry | Molecular mass is 13334.5829±0.0140 Da from positions 27 - 146. Determined by ESI. Ref.19 |
Ontologies
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||||||||||||||||
Molecule processing | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 26 | 26 | Ref.11 Ref.12 Ref.13 Ref.14 | |||||||||||||||||||
| Chain | 27 – 146 | 120 | Cystatin-C Ref.1 Ref.3 | PRO_0000006639 | ||||||||||||||||||
Regions | ||||||||||||||||||||||
| Motif | 81 – 85 | 5 | Secondary area of contact | |||||||||||||||||||
Sites | ||||||||||||||||||||||
| Site | 37 | 1 | Reactive site | |||||||||||||||||||
Amino acid modifications | ||||||||||||||||||||||
| Disulfide bond | 99 ↔ 109 | Ref.15 Ref.19 | ||||||||||||||||||||
| Disulfide bond | 123 ↔ 143 | Ref.15 Ref.19 | ||||||||||||||||||||
Natural variations | ||||||||||||||||||||||
| Natural variant | 25 | 1 | A → T Associated with ARMD11 and O-glycosylated in region between AA 22-28. Ref.2 Ref.18 Ref.23 Corresponds to variant rs1064039 [ dbSNP | Ensembl ]. | VAR_011893 | ||||||||||||||||||
| Natural variant | 94 | 1 | L → Q in AMYL6. Ref.3 Ref.22 Corresponds to variant rs28939068 [ dbSNP | Ensembl ]. | VAR_002207 | ||||||||||||||||||
Experimental info | ||||||||||||||||||||||
| Mutagenesis | 25 | 1 | A → S: Shows a dual distribution to the Golgi apparatus and to the mitochondria. Ref.17 | |||||||||||||||||||
Secondary structure | ||||||||||||||||||||||
Helix Strand Turn | ||||||||||||||||||||||
| Helix | 47 – 63 | 17 | ||||||||||||||||||||
| Beta strand | 67 – 100 | 34 | ||||||||||||||||||||
| Helix | 106 – 108 | 3 | ||||||||||||||||||||
| Turn | 115 – 117 | 3 | ||||||||||||||||||||
| Beta strand | 120 – 130 | 11 | ||||||||||||||||||||
| Helix | 131 – 133 | 3 | ||||||||||||||||||||
| Beta strand | 135 – 145 | 11 | ||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Molecular cloning and sequence analysis of cDNA coding for the precursor of the human cysteine proteinase inhibitor cystatin C." Abrahamson M., Grubb A., Olafsson I., Lundwall A. FEBS Lett. 216:229-233(1987) [PubMed: 3495457] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA]. Tissue: Placenta. |
| [2] | "The human cystatin C gene (CST3) is a member of the cystatin gene family which is localized on chromosome 20." Saitoh E., Sabatini L.M., Eddy R.L., Shows T.B., Azen E.A., Isemura S., Sanada K. Biochem. Biophys. Res. Commun. 162:1324-1331(1989) [PubMed: 2764935] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANT THR-25. |
| [3] | "Stroke in Icelandic patients with hereditary amyloid angiopathy is related to a mutation in the cystatin C gene, an inhibitor of cysteine proteases." Levy E., Lopez-Otin C., Ghiso J., Geltner D., Frangione B. J. Exp. Med. 169:1771-1778(1989) [PubMed: 2541223] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANT AMYL6 GLN-94. Tissue: Brain. |
| [4] | "Structure and expression of the human cystatin C gene." Abrahamson M., Olafsson I., Palsdottir A., Ulvsbaeck M., Lundwall A., Jensson O., Grubb A. Biochem. J. 268:287-294(1990) [PubMed: 2363674] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Tissue: Leukocyte. |
| [5] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Synovial cell. |
| [6] | "Cloning of human full-length CDSs in BD Creator(TM) system donor vector." Kalnine N., Chen X., Rolfs A., Halleck A., Hines L., Eisenstein S., Koundinya M., Raphael J., Moreira D., Kelley T., LaBaer J., Lin Y., Phelan M., Farmer A. Submitted (MAY-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. |
| [7] | "Cloning of human full open reading frames in Gateway(TM) system entry vector (pDONR201)." Halleck A., Ebert L., Mkoundinya M., Schick M., Eisenstein S., Neubert P., Kstrang K., Schatten R., Shen B., Henze S., Mar W., Korn B., Zuo D., Hu Y., LaBaer J. Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. |
| [8] | "The DNA sequence and comparative analysis of human chromosome 20." Deloukas P., Matthews L.H., Ashurst J.L., Burton J., Gilbert J.G.R., Jones M., Stavrides G., Almeida J.P., Babbage A.K., Bagguley C.L., Bailey J., Barlow K.F., Bates K.N., Beard L.M., Beare D.M., Beasley O.P., Bird C.P., Blakey S.E. Rogers J.Nature 414:865-871(2001) [PubMed: 11780052] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [9] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [10] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Brain. |
| [11] | "Human gamma-trace, a basic microprotein: amino acid sequence and presence in the adenohypophysis." Grubb A., Loefberg H. Proc. Natl. Acad. Sci. U.S.A. 79:3024-3027(1982) [PubMed: 6283552] [Abstract] Cited for: PROTEIN SEQUENCE OF 27-146. |
| [12] | "Human cystatin, a new protein inhibitor of cysteine proteinases." Brzin J., Popovic T., Turk V. Biochem. Biophys. Res. Commun. 118:103-109(1984) [PubMed: 6365094] [Abstract] Cited for: PROTEIN SEQUENCE OF 27-76. |
| [13] | "Protein inhibitors of cysteine proteinases. III. Amino-acid sequence of cystatin from chicken egg white." Turk V., Brzin J., Longer M., Ritonja A., Eropkin M., Borchart U., Machleidt W. Hoppe-Seyler's Z. Physiol. Chem. 364:1487-1496(1983) [PubMed: 6662498] [Abstract] Cited for: PROTEIN SEQUENCE OF 27-73. |
| [14] | "Signal peptide prediction based on analysis of experimentally verified cleavage sites." Zhang Z., Henzel W.J. Protein Sci. 13:2819-2824(2004) [PubMed: 15340161] [Abstract] Cited for: PROTEIN SEQUENCE OF 27-41. |
| [15] | "The disulphide bridges of human cystatin C (gamma-trace) and chicken cystatin." Grubb A., Loefberg H., Barrett A.J. FEBS Lett. 170:370-374(1984) Cited for: DISULFIDE BONDS. |
| [16] | "Cystatin C as a potential cerebrospinal fluid marker for the diagnosis of Creutzfeldt-Jakob disease." Sanchez J.C., Guillaume E., Lescuyer P., Allard L., Carrette O., Scherl A., Burgess J., Corthals G.L., Burkhard P.R., Hochstrasser D.F. Proteomics 4:2229-2233(2004) [PubMed: 15274116] [Abstract] Cited for: TISSUE SPECIFICITY. |
| [17] | "A dual Golgi- and mitochondria-localised Ala25Ser precursor cystatin C: an additional tool for characterising intracellular mis-localisation leading to increased AMD susceptibility." Ratnayaka A., Paraoan L., Spiller D.G., Hiscott P., Nelson G., White M.R., Grierson I. Exp. Eye Res. 84:1135-1139(2007) [PubMed: 16635487] [Abstract] Cited for: MUTAGENESIS OF ALA-25. |
| [18] | "Enrichment of glycopeptides for glycan structure and attachment site identification." Nilsson J., Rueetschi U., Halim A., Hesse C., Carlsohn E., Brinkmalm G., Larson G. Nat. Methods 6:809-811(2009) [PubMed: 19838169] [Abstract] Cited for: GLYCOSYLATION [LARGE SCALE ANALYSIS], STRUCTURE OF CARBOHYDRATES, MASS SPECTROMETRY, CHARACTERIZATION OF VARIANT THR-25. Tissue: Cerebrospinal fluid. |
| [19] | "Confident assignment of intact mass tags to human salivary cystatins using top-down Fourier-transform ion cyclotron resonance mass spectrometry." Ryan C.M., Souda P., Halgand F., Wong D.T., Loo J.A., Faull K.F., Whitelegge J.P. J. Am. Soc. Mass Spectrom. 21:908-917(2010) [PubMed: 20189825] [Abstract] Cited for: DISULFIDE BONDS, TISSUE SPECIFICITY, SUBCELLULAR LOCATION, MASS SPECTROMETRY. Tissue: Saliva. |
| [20] | "Human cystatin C, an amyloidogenic protein, dimerizes through three-dimensional domain swapping." Janowski R., Kozak M., Jankowska E., Grzonka Z., Grubb A., Abrahamson M., Jaskolski M. Nat. Struct. Biol. 8:316-320(2001) [PubMed: 11276250] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.5 ANGSTROMS) OF 27-146. |
| [21] | "3D domain-swapped human cystatin C with amyloid-like intermolecular beta-sheets." Janowski R., Kozak M., Abrahamson M., Grubb A., Jaskolski M. Proteins 61:570-578(2005) [PubMed: 16170782] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (3.03 ANGSTROMS) OF 27-146. |
| [22] | "Hereditary cystatin C amyloid angiopathy: identification of the disease-causing mutation and specific diagnosis by polymerase chain reaction based analysis." Abrahamson M., Jonsdottir S., Olafsson I., Jensson O., Grubb A. Hum. Genet. 89:377-380(1992) [PubMed: 1352269] [Abstract] Cited for: VARIANT AMYL6 GLN-94. |
| [23] | "CST3 genotype associated with exudative age related macular degeneration." Zurdel J., Finckh U., Menzer G., Nitsch R.M., Richard G. Br. J. Ophthalmol. 86:214-219(2002) [PubMed: 11815350] [Abstract] Cited for: ASSOCIATION OF VARIANT THR-25 WITH ARMD11. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | X05607 mRNA. Translation: CAA29096.1. M27891, M27889, M27890 Genomic DNA. Translation: AAA52164.1. X61681, X61682, X61683 Genomic DNA. Translation: CAA43856.2. X52255 Genomic DNA. Translation: CAA36497.1. AK312213 mRNA. Translation: BAG35146.1. BT006839 mRNA. Translation: AAP35485.1. CR541988 mRNA. Translation: CAG46785.1. CR542018 mRNA. Translation: CAG46815.1. AL121894 Genomic DNA. Translation: CAC05424.1. CH471133 Genomic DNA. Translation: EAX10137.1. CH471133 Genomic DNA. Translation: EAX10138.1. BC013083 mRNA. Translation: AAH13083.1. BC110305 mRNA. Translation: AAI10306.1. | ||||||||||||||||||||||||||||||||||||
| IPI | IPI00032293. | ||||||||||||||||||||||||||||||||||||
| PIR | UDHU. S10216. | ||||||||||||||||||||||||||||||||||||
| RefSeq | NP_000090.1. NM_000099.2. | ||||||||||||||||||||||||||||||||||||
| UniGene | Hs.304682. | ||||||||||||||||||||||||||||||||||||
3D structure databases | |||||||||||||||||||||||||||||||||||||
| PDBe RCSB PDB PDBj |
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| ProteinModelPortal | P01034. | ||||||||||||||||||||||||||||||||||||
| SMR | P01034. Positions 36-146. | ||||||||||||||||||||||||||||||||||||
| ModBase | Search... | ||||||||||||||||||||||||||||||||||||
Protein-protein interaction databases | |||||||||||||||||||||||||||||||||||||
| IntAct | P01034. 4 interactions. | ||||||||||||||||||||||||||||||||||||
| MINT | MINT-2857857. | ||||||||||||||||||||||||||||||||||||
| STRING | P01034. | ||||||||||||||||||||||||||||||||||||
Protein family/group databases | |||||||||||||||||||||||||||||||||||||
| MEROPS | I25.004. | ||||||||||||||||||||||||||||||||||||
Polymorphism databases | |||||||||||||||||||||||||||||||||||||
| DMDM | 118183. | ||||||||||||||||||||||||||||||||||||
2D gel databases | |||||||||||||||||||||||||||||||||||||
| DOSAC-COBS-2DPAGE | P01034. | ||||||||||||||||||||||||||||||||||||
| UCD-2DPAGE | P01034. | ||||||||||||||||||||||||||||||||||||
Proteomic databases | |||||||||||||||||||||||||||||||||||||
| PeptideAtlas | P01034. | ||||||||||||||||||||||||||||||||||||
| PRIDE | P01034. | ||||||||||||||||||||||||||||||||||||
Protocols and materials databases | |||||||||||||||||||||||||||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||||||||||||||||||||||||||
Genome annotation databases | |||||||||||||||||||||||||||||||||||||
| Ensembl | ENST00000376925; ENSP00000366124; ENSG00000101439. ENST00000398409; ENSP00000381446; ENSG00000101439. ENST00000398411; ENSP00000381448; ENSG00000101439. | ||||||||||||||||||||||||||||||||||||
| GeneID | 1471. | ||||||||||||||||||||||||||||||||||||
| KEGG | hsa:1471. | ||||||||||||||||||||||||||||||||||||
| UCSC | uc002wtm.2. human. | ||||||||||||||||||||||||||||||||||||
Organism-specific databases | |||||||||||||||||||||||||||||||||||||
| CTD | 1471. | ||||||||||||||||||||||||||||||||||||
| GeneCards | GC20M023608. | ||||||||||||||||||||||||||||||||||||
| H-InvDB | HIX0015694. | ||||||||||||||||||||||||||||||||||||
| HGNC | HGNC:2475. CST3. | ||||||||||||||||||||||||||||||||||||
| HPA | CAB000118. HPA013143. | ||||||||||||||||||||||||||||||||||||
| MIM | 105150. phenotype. 604312. gene. 611953. phenotype. | ||||||||||||||||||||||||||||||||||||
| neXtProt | NX_P01034. | ||||||||||||||||||||||||||||||||||||
| Orphanet | 85458. Hereditary cerebral hemorrhage with amyloidosis. | ||||||||||||||||||||||||||||||||||||
| PharmGKB | PA26976. | ||||||||||||||||||||||||||||||||||||
| GenAtlas | Search... | ||||||||||||||||||||||||||||||||||||
Phylogenomic databases | |||||||||||||||||||||||||||||||||||||
| eggNOG | prNOG20133. | ||||||||||||||||||||||||||||||||||||
| GeneTree | ENSGT00570000079039. | ||||||||||||||||||||||||||||||||||||
| HOGENOM | HBG717109. | ||||||||||||||||||||||||||||||||||||
| HOVERGEN | HBG009556. | ||||||||||||||||||||||||||||||||||||
| InParanoid | P01034. | ||||||||||||||||||||||||||||||||||||
| OMA | ASNDAYH. | ||||||||||||||||||||||||||||||||||||
| OrthoDB | EOG49GKJ0. | ||||||||||||||||||||||||||||||||||||
| PhylomeDB | P01034. | ||||||||||||||||||||||||||||||||||||
Enzyme and pathway databases | |||||||||||||||||||||||||||||||||||||
| Reactome | REACT_75925. Amyloids. | ||||||||||||||||||||||||||||||||||||
Gene expression databases | |||||||||||||||||||||||||||||||||||||
| ArrayExpress | P01034. | ||||||||||||||||||||||||||||||||||||
| Bgee | P01034. | ||||||||||||||||||||||||||||||||||||
| CleanEx | HS_CST3. | ||||||||||||||||||||||||||||||||||||
| Genevestigator | P01034. | ||||||||||||||||||||||||||||||||||||
| GermOnline | ENSG00000101439. Homo sapiens. | ||||||||||||||||||||||||||||||||||||
Family and domain databases | |||||||||||||||||||||||||||||||||||||
| InterPro | IPR000010. Prot_inh_cystat. IPR018073. Prot_inh_cystat_CS. [Graphical view] | ||||||||||||||||||||||||||||||||||||
| KO | K13899. | ||||||||||||||||||||||||||||||||||||
| Pfam | PF00031. Cystatin. 1 hit. [Graphical view] | ||||||||||||||||||||||||||||||||||||
| SMART | SM00043. CY. 1 hit. [Graphical view] | ||||||||||||||||||||||||||||||||||||
| PROSITE | PS00287. CYSTATIN. 1 hit. [Graphical view] | ||||||||||||||||||||||||||||||||||||
| ProtoNet | Search... | ||||||||||||||||||||||||||||||||||||
Other | |||||||||||||||||||||||||||||||||||||
| NextBio | 6039. | ||||||||||||||||||||||||||||||||||||
| PMAP-CutDB | P01034. | ||||||||||||||||||||||||||||||||||||
| SOURCE | Search... | ||||||||||||||||||||||||||||||||||||
Entry information
| Entry name | CYTC_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P01034 Secondary accession number(s): B2R5J9, D3DW42, Q6FGW9 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 20 Human chromosome 20: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with