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P00931

- TRP_YEAST

UniProt

P00931 - TRP_YEAST

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Protein
Tryptophan synthase
Gene
TRP5, YGL026C
Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at protein leveli

Functioni

Catalytic activityi

L-serine + 1-C-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + D-glyceraldehyde 3-phosphate + H2O.UniRule annotation

Cofactori

Pyridoxal phosphate.

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei50 – 501Proton acceptor By similarity
Active sitei61 – 611Proton acceptor By similarity

GO - Molecular functioni

  1. tryptophan synthase activity Source: SGD
Complete GO annotation...

GO - Biological processi

  1. tryptophan biosynthetic process Source: SGD
Complete GO annotation...

Keywords - Molecular functioni

Lyase

Keywords - Biological processi

Amino-acid biosynthesis, Aromatic amino acid biosynthesis, Tryptophan biosynthesis

Keywords - Ligandi

Pyridoxal phosphate

Enzyme and pathway databases

BioCyciYEAST:YGL026C-MONOMER.
UniPathwayiUPA00035; UER00044.

Names & Taxonomyi

Protein namesi
Recommended name:
Tryptophan synthase (EC:4.2.1.20)
Gene namesi
Name:TRP5
Ordered Locus Names:YGL026C
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome VII

Organism-specific databases

CYGDiYGL026c.
SGDiS000002994. TRP5.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 707707Tryptophan synthaseUniRule annotation
PRO_0000098726Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei384 – 3841N6-(pyridoxal phosphate)lysine By similarity
Modified residuei540 – 5401Phosphoserine1 Publication
Modified residuei683 – 6831Phosphoserine1 Publication

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiP00931.
PaxDbiP00931.
PeptideAtlasiP00931.
PRIDEiP00931.

Expressioni

Gene expression databases

GenevestigatoriP00931.

Interactioni

Protein-protein interaction databases

BioGridi33221. 21 interactions.
DIPiDIP-1398N.
IntActiP00931. 7 interactions.
MINTiMINT-405390.
STRINGi4932.YGL026C.

Structurei

3D structure databases

ProteinModelPortaliP00931.
SMRiP00931. Positions 19-244, 306-687.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni1 – 297297Tryptophan synthase alpha chainUniRule annotation
Add
BLAST
Regioni298 – 707410Tryptophan synthase beta chainUniRule annotation
Add
BLAST

Sequence similaritiesi

In the N-terminal section; belongs to the TrpA family.
In the C-terminal section; belongs to the TrpB family.

Phylogenomic databases

eggNOGiCOG0133.
HOGENOMiHOG000161710.
KOiK01694.
OMAiPGVFHGV.
OrthoDBiEOG7D864Z.

Family and domain databases

Gene3Di3.20.20.70. 1 hit.
HAMAPiMF_00131. Trp_synth_alpha.
MF_00133. Trp_synth_beta.
InterProiIPR013785. Aldolase_TIM.
IPR011060. RibuloseP-bd_barrel.
IPR001926. Trp_syn_b_sub_like_PLP_eny_SF.
IPR006653. Trp_synth_b_CS.
IPR006654. Trp_synth_beta.
IPR023026. Trp_synth_beta/beta-like.
IPR018204. Trp_synthase_alpha_AS.
IPR002028. Trp_synthase_suA.
[Graphical view]
PANTHERiPTHR10314:SF3. PTHR10314:SF3. 1 hit.
PfamiPF00291. PALP. 1 hit.
PF00290. Trp_syntA. 1 hit.
[Graphical view]
SUPFAMiSSF51366. SSF51366. 1 hit.
SSF53686. SSF53686. 1 hit.
TIGRFAMsiTIGR00262. trpA. 1 hit.
TIGR00263. trpB. 1 hit.
PROSITEiPS00167. TRP_SYNTHASE_ALPHA. 1 hit.
PS00168. TRP_SYNTHASE_BETA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P00931-1 [UniParc]FASTAAdd to Basket

« Hide

MSEQLRQTFA NAKKENRNAL VTFMTAGYPT VKDTVPILKG FQDGGVDIIE    50
LGMPFSDPIA DGPTIQLSNT VALQNGVTLP QTLEMVSQAR NEGVTVPIIL 100
MGYYNPILNY GEERFIQDAA KAGANGFIIV DLPPEEALKV RNYINDNGLS 150
LIPLVAPSTT DERLELLSHI ADSFVYVVSR MGTTGVQSSV ASDLDELISR 200
VRKYTKDTPL AVGFGVSTRE HFQSVGSVAD GVVIGSKIVT LCGDAPEGKR 250
YDVAKEYVQG ILNGAKHKVL SKDEFFAFQK ESLKSANVKK EILDEFDENH 300
KHPIRFGDFG GQYVPEALHA CLRELEKGFD EAVADPTFWE DFKSLYSYIG 350
RPSSLHKAER LTEHCQGAQI WLKREDLNHT GSHKINNALA QVLLAKRLGK 400
KNVIAETGAG QHGVATATAC AKFGLTCTVF MGAEDVRRQA LNVFRMRILG 450
AKVIAVTNGT KTLRDATSEA FRFWVTNLKT TYYVVGSAIG PHPYPTLVRT 500
FQSVIGKETK EQFAAMNNGK LPDAVVACVG GGSNSTGMFS PFEHDTSVKL 550
LGVEAGGDGV DTKFHSATLT AGRPGVFHGV KTYVLQDSDG QVHDTHSVSA 600
GLDYPGVGPE LAYWKSTGRA QFIAATDAQA LLGFKLLSQL EGIIPALESS 650
HAVYGACELA KTMKPDQHLV INISGRGDKD VQSVAEVLPK LGPKIGWDLR 700
FEEDPSA 707
Length:707
Mass (Da):76,626
Last modified:July 21, 1986 - v1
Checksum:iF5241A0127A2D166
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
V01342 Genomic DNA. Translation: CAA24635.1.
V01343 Genomic DNA. Translation: CAA24636.1.
Z72548 Genomic DNA. Translation: CAA96727.1.
BK006941 Genomic DNA. Translation: DAA08073.1.
PIRiA01154. TSBYAB.
RefSeqiNP_011489.1. NM_001180891.1.

Genome annotation databases

EnsemblFungiiYGL026C; YGL026C; YGL026C.
GeneIDi852858.
KEGGisce:YGL026C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
V01342 Genomic DNA. Translation: CAA24635.1 .
V01343 Genomic DNA. Translation: CAA24636.1 .
Z72548 Genomic DNA. Translation: CAA96727.1 .
BK006941 Genomic DNA. Translation: DAA08073.1 .
PIRi A01154. TSBYAB.
RefSeqi NP_011489.1. NM_001180891.1.

3D structure databases

ProteinModelPortali P00931.
SMRi P00931. Positions 19-244, 306-687.
ModBasei Search...

Protein-protein interaction databases

BioGridi 33221. 21 interactions.
DIPi DIP-1398N.
IntActi P00931. 7 interactions.
MINTi MINT-405390.
STRINGi 4932.YGL026C.

Proteomic databases

MaxQBi P00931.
PaxDbi P00931.
PeptideAtlasi P00931.
PRIDEi P00931.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii YGL026C ; YGL026C ; YGL026C .
GeneIDi 852858.
KEGGi sce:YGL026C.

Organism-specific databases

CYGDi YGL026c.
SGDi S000002994. TRP5.

Phylogenomic databases

eggNOGi COG0133.
HOGENOMi HOG000161710.
KOi K01694.
OMAi PGVFHGV.
OrthoDBi EOG7D864Z.

Enzyme and pathway databases

UniPathwayi UPA00035 ; UER00044 .
BioCyci YEAST:YGL026C-MONOMER.

Miscellaneous databases

NextBioi 972463.

Gene expression databases

Genevestigatori P00931.

Family and domain databases

Gene3Di 3.20.20.70. 1 hit.
HAMAPi MF_00131. Trp_synth_alpha.
MF_00133. Trp_synth_beta.
InterProi IPR013785. Aldolase_TIM.
IPR011060. RibuloseP-bd_barrel.
IPR001926. Trp_syn_b_sub_like_PLP_eny_SF.
IPR006653. Trp_synth_b_CS.
IPR006654. Trp_synth_beta.
IPR023026. Trp_synth_beta/beta-like.
IPR018204. Trp_synthase_alpha_AS.
IPR002028. Trp_synthase_suA.
[Graphical view ]
PANTHERi PTHR10314:SF3. PTHR10314:SF3. 1 hit.
Pfami PF00291. PALP. 1 hit.
PF00290. Trp_syntA. 1 hit.
[Graphical view ]
SUPFAMi SSF51366. SSF51366. 1 hit.
SSF53686. SSF53686. 1 hit.
TIGRFAMsi TIGR00262. trpA. 1 hit.
TIGR00263. trpB. 1 hit.
PROSITEi PS00167. TRP_SYNTHASE_ALPHA. 1 hit.
PS00168. TRP_SYNTHASE_BETA. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Yeast gene TRP5: structure, function, regulation."
    Zalkin H., Yanofsky C.
    J. Biol. Chem. 257:1491-1500(1982) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "The nucleotide sequence of Saccharomyces cerevisiae chromosome VII."
    Tettelin H., Agostoni-Carbone M.L., Albermann K., Albers M., Arroyo J., Backes U., Barreiros T., Bertani I., Bjourson A.J., Brueckner M., Bruschi C.V., Carignani G., Castagnoli L., Cerdan E., Clemente M.L., Coblenz A., Coglievina M., Coissac E.
    , Defoor E., Del Bino S., Delius H., Delneri D., de Wergifosse P., Dujon B., Durand P., Entian K.-D., Eraso P., Escribano V., Fabiani L., Fartmann B., Feroli F., Feuermann M., Frontali L., Garcia-Gonzalez M., Garcia-Saez M.I., Goffeau A., Guerreiro P., Hani J., Hansen M., Hebling U., Hernandez K., Heumann K., Hilger F., Hofmann B., Indge K.J., James C.M., Klima R., Koetter P., Kramer B., Kramer W., Lauquin G., Leuther H., Louis E.J., Maillier E., Marconi A., Martegani E., Mazon M.J., Mazzoni C., McReynolds A.D.K., Melchioretto P., Mewes H.-W., Minenkova O., Mueller-Auer S., Nawrocki A., Netter P., Neu R., Nombela C., Oliver S.G., Panzeri L., Paoluzi S., Plevani P., Portetelle D., Portillo F., Potier S., Purnelle B., Rieger M., Riles L., Rinaldi T., Robben J., Rodrigues-Pousada C., Rodriguez-Belmonte E., Rodriguez-Torres A.M., Rose M., Ruzzi M., Saliola M., Sanchez-Perez M., Schaefer B., Schaefer M., Scharfe M., Schmidheini T., Schreer A., Skala J., Souciet J.-L., Steensma H.Y., Talla E., Thierry A., Vandenbol M., van der Aart Q.J.M., Van Dyck L., Vanoni M., Verhasselt P., Voet M., Volckaert G., Wambutt R., Watson M.D., Weber N., Wedler E., Wedler H., Wipfli P., Wolf K., Wright L.F., Zaccaria P., Zimmermann M., Zollner A., Kleine K.
    Nature 387:81-84(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  3. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  4. "DNA sequences flanking an E. coli insertion element IS2 in a cloned yeast TRP5 gene."
    Brosius J., Walz A.
    Gene 17:223-228(1982) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-172.
  5. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
  6. "A multidimensional chromatography technology for in-depth phosphoproteome analysis."
    Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H.
    Mol. Cell. Proteomics 7:1389-1396(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-540 AND SER-683, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  7. "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution."
    Holt L.J., Tuch B.B., Villen J., Johnson A.D., Gygi S.P., Morgan D.O.
    Science 325:1682-1686(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiTRP_YEAST
AccessioniPrimary (citable) accession number: P00931
Secondary accession number(s): D6VUB2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: July 21, 1986
Last modified: May 14, 2014
This is version 145 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 15500 molecules/cell in log phase SD medium.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families
  3. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  4. Yeast chromosome VII
    Yeast (Saccharomyces cerevisiae) chromosome VII: entries and gene names

External Data

Dasty 3

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