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P00688

- AMYP_MOUSE

UniProt

P00688 - AMYP_MOUSE

Protein

Pancreatic alpha-amylase

Gene

Amy2

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 145 (01 Oct 2014)
      Sequence version 2 (27 Jul 2011)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.

    Cofactori

    Binds 1 calcium ion per subunit.By similarity
    Binds 1 chloride ion per subunit.By similarity

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi115 – 1151CalciumBy similarity
    Metal bindingi170 – 1701Calcium; via carbonyl oxygenBy similarity
    Metal bindingi179 – 1791CalciumBy similarity
    Binding sitei207 – 2071ChlorideBy similarity
    Active sitei209 – 2091NucleophileBy similarity
    Metal bindingi213 – 2131Calcium; via carbonyl oxygenBy similarity
    Active sitei245 – 2451Proton donorBy similarity
    Binding sitei310 – 3101ChlorideBy similarity
    Sitei312 – 3121Transition state stabilizerBy similarity
    Binding sitei349 – 3491ChlorideBy similarity

    GO - Molecular functioni

    1. alpha-amylase activity Source: UniProtKB
    2. calcium ion binding Source: UniProtKB
    3. chloride ion binding Source: UniProtKB

    GO - Biological processi

    1. carbohydrate catabolic process Source: UniProtKB

    Keywords - Molecular functioni

    Glycosidase, Hydrolase

    Keywords - Biological processi

    Carbohydrate metabolism

    Keywords - Ligandi

    Calcium, Chloride, Metal-binding

    Enzyme and pathway databases

    ReactomeiREACT_217960. Digestion of dietary carbohydrate.

    Protein family/group databases

    CAZyiGH13. Glycoside Hydrolase Family 13.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Pancreatic alpha-amylase (EC:3.2.1.1)
    Short name:
    PA
    Alternative name(s):
    1,4-alpha-D-glucan glucanohydrolase
    Gene namesi
    Name:Amy2
    Synonyms:Amy2a
    OrganismiMus musculus (Mouse)
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 3

    Organism-specific databases

    MGIiMGI:88020. Amy2.

    Subcellular locationi

    GO - Cellular componenti

    1. extracellular space Source: UniProtKB

    Keywords - Cellular componenti

    Secreted

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 15151 PublicationAdd
    BLAST
    Chaini16 – 508493Pancreatic alpha-amylasePRO_0000001398Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei16 – 161Pyrrolidone carboxylic acid1 Publication
    Disulfide bondi43 ↔ 101By similarity
    Disulfide bondi85 ↔ 130By similarity
    Disulfide bondi156 ↔ 172By similarity
    Disulfide bondi390 ↔ 396By similarity
    Disulfide bondi462 ↔ 474By similarity

    Keywords - PTMi

    Disulfide bond, Pyrrolidone carboxylic acid

    Proteomic databases

    MaxQBiP00688.
    PaxDbiP00688.
    PRIDEiP00688.

    2D gel databases

    SWISS-2DPAGEP00688.

    PTM databases

    PhosphoSiteiP00688.

    Expressioni

    Gene expression databases

    GenevestigatoriP00688.

    Interactioni

    Subunit structurei

    Monomer.By similarity

    Protein-protein interaction databases

    STRINGi10090.ENSMUSP00000096264.

    Structurei

    3D structure databases

    ProteinModelPortaliP00688.
    SMRiP00688. Positions 16-508.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 13 family.Curated

    Keywords - Domaini

    Signal

    Phylogenomic databases

    eggNOGiCOG0366.
    GeneTreeiENSGT00390000002882.
    HOGENOMiHOG000253313.
    HOVERGENiHBG000061.
    InParanoidiQ4VBW6.
    KOiK01176.
    OMAiSNTYITA.
    OrthoDBiEOG7RJPR2.
    TreeFamiTF312850.

    Family and domain databases

    Gene3Di2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    InterProiIPR006048. A-amylase_b_C.
    IPR006046. Alpha_amylase.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    [Graphical view]
    PRINTSiPR00110. ALPHAAMYLASE.
    SMARTiSM00642. Aamy. 1 hit.
    SM00632. Aamy_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P00688-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKFVLLLSLI GFCWAQYDPH TSDGRTAIVH LFEWRWVDIA KECERYLAPK    50
    GFGGVQVSPP NENVVVHNPS RPWWERYQPI SYKICTRSGN EDEFRDMVTR 100
    CNNVGVRIYV DAVINHMCGA GNPAGTSSTC GSYLNPNNRE FPAVPYSAWD 150
    FNDNKCNGEI DNYNDAYQVR NCRLTGLLDL ALEKDYVRTK VADYMNHLID 200
    IGVAGFRLDA AKHMWPGDIK AVLDKLHNLN TKWFSQGSRP FIFQEVIDLG 250
    GEAIKGSEYF GNGRVTEFKY GAKLGTVIRK WNGEKMSYLK NWGEGWGLVP 300
    SDRALVFVDN HDNQRGHGAG GSSILTFWDA RMYKMAVGFM LAHPYGFTRV 350
    MSSYRWNRNF QNGKDQNDWI GPPNNNGVTK EVTINADTTC GNDWVCEHRW 400
    RQIRNMVAFR NVVNGQPFSN WWDNNSNQVA FSRGNRGFIV FNNDDWALSA 450
    TLQTGLPAGT YCDVISGDKV DGNCTGLRVN VGSDGKAHFS ISNSAEDPFI 500
    AIHADSKL 508
    Length:508
    Mass (Da):57,318
    Last modified:July 27, 2011 - v2
    Checksum:iB204B03768132593
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti70 – 701S → T in AAA37228. (PubMed:6176715)Curated
    Sequence conflicti85 – 851C → S in AAA37228. (PubMed:6176715)Curated
    Sequence conflicti217 – 2171G → R in CAA24098. (PubMed:6157477)Curated
    Sequence conflicti217 – 2171G → R in CAA26413. (PubMed:6098446)Curated
    Sequence conflicti217 – 2171G → R in CAA26414. (PubMed:6098446)Curated
    Sequence conflicti217 – 2171G → R in CAA26415. (PubMed:6098446)Curated

    Natural variant

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Natural varianti64 – 641V → I in A1, B(C) and AMY-2.2Y.
    Natural varianti66 – 661V → I in AMY-2.2Y.
    Natural varianti120 – 1201A → S in A1, B(A) and B(C).
    Natural varianti161 – 1611D → S in A1, B(A) and B(C); requires 2 nucleotide substitutions.
    Natural varianti174 – 1741L → V in A1 and B(C).
    Natural varianti175 – 1751T → S in B(A).
    Natural varianti254 – 2541I → V in A1 and B(C).
    Natural varianti270 – 2723YGA → FGV in A1 and B(C).
    Natural varianti298 – 2981L → M in A1, B(A) and B(C).
    Natural varianti322 – 3221S → A in B(A).
    Natural varianti419 – 4191S → A in B1.
    Natural varianti450 – 4501A → E in B(C).

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    V00718 mRNA. Translation: CAA24098.1.
    X02576 mRNA. Translation: CAA26413.1.
    X02577 mRNA. Translation: CAA26414.1.
    X02578 mRNA. Translation: CAA26415.1.
    AK133526 mRNA. Translation: BAE21706.1.
    BC094924 mRNA. Translation: AAH94924.1.
    BC100579 mRNA. Translation: AAI00580.1.
    J00357 Genomic DNA. Translation: AAA37228.1.
    J00358 Genomic DNA. Translation: AAA37229.1.
    J00361 Genomic DNA. Translation: AAA37233.1.
    X02343 Genomic DNA. Translation: CAA26202.1.
    M16540 Genomic DNA. Translation: AAA37223.1.
    M15965 Genomic DNA. Translation: AAA37226.1.
    M11895 mRNA. Translation: AAA37224.1.
    M11896 mRNA. Translation: AAA37227.1.
    M11891 Genomic DNA. Translation: AAA37222.1.
    CCDSiCCDS17775.1.
    PIRiA90995. ALMSP1.
    B90798. ALMSP.
    B90995. ALMSPC.
    C90995. ALMSPA.
    I49493.
    I49494.
    RefSeqiNP_001036176.1. NM_001042711.2.
    NP_001153622.1. NM_001160150.1.
    NP_001153623.1. NM_001160151.1.
    NP_001153624.1. NM_001160152.1.
    UniGeneiMm.275426.
    Mm.443376.
    Mm.462977.

    Genome annotation databases

    EnsembliENSMUST00000098667; ENSMUSP00000096264; ENSMUSG00000096569.
    ENSMUST00000098673; ENSMUSP00000096270; ENSMUSG00000074268.
    ENSMUST00000179314; ENSMUSP00000136894; ENSMUSG00000093931.
    ENSMUST00000179568; ENSMUSP00000137025; ENSMUSG00000096770.
    GeneIDi100043684.
    100043686.
    100043688.
    109959.
    KEGGimmu:100043684.
    mmu:100043686.
    mmu:100043688.
    mmu:109959.
    UCSCiuc008rav.2. mouse.

    Keywords - Coding sequence diversityi

    Polymorphism

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    V00718 mRNA. Translation: CAA24098.1 .
    X02576 mRNA. Translation: CAA26413.1 .
    X02577 mRNA. Translation: CAA26414.1 .
    X02578 mRNA. Translation: CAA26415.1 .
    AK133526 mRNA. Translation: BAE21706.1 .
    BC094924 mRNA. Translation: AAH94924.1 .
    BC100579 mRNA. Translation: AAI00580.1 .
    J00357 Genomic DNA. Translation: AAA37228.1 .
    J00358 Genomic DNA. Translation: AAA37229.1 .
    J00361 Genomic DNA. Translation: AAA37233.1 .
    X02343 Genomic DNA. Translation: CAA26202.1 .
    M16540 Genomic DNA. Translation: AAA37223.1 .
    M15965 Genomic DNA. Translation: AAA37226.1 .
    M11895 mRNA. Translation: AAA37224.1 .
    M11896 mRNA. Translation: AAA37227.1 .
    M11891 Genomic DNA. Translation: AAA37222.1 .
    CCDSi CCDS17775.1.
    PIRi A90995. ALMSP1.
    B90798. ALMSP.
    B90995. ALMSPC.
    C90995. ALMSPA.
    I49493.
    I49494.
    RefSeqi NP_001036176.1. NM_001042711.2.
    NP_001153622.1. NM_001160150.1.
    NP_001153623.1. NM_001160151.1.
    NP_001153624.1. NM_001160152.1.
    UniGenei Mm.275426.
    Mm.443376.
    Mm.462977.

    3D structure databases

    ProteinModelPortali P00688.
    SMRi P00688. Positions 16-508.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 10090.ENSMUSP00000096264.

    Protein family/group databases

    CAZyi GH13. Glycoside Hydrolase Family 13.

    PTM databases

    PhosphoSitei P00688.

    2D gel databases

    SWISS-2DPAGE P00688.

    Proteomic databases

    MaxQBi P00688.
    PaxDbi P00688.
    PRIDEi P00688.

    Protocols and materials databases

    DNASUi 109959.
    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000098667 ; ENSMUSP00000096264 ; ENSMUSG00000096569 .
    ENSMUST00000098673 ; ENSMUSP00000096270 ; ENSMUSG00000074268 .
    ENSMUST00000179314 ; ENSMUSP00000136894 ; ENSMUSG00000093931 .
    ENSMUST00000179568 ; ENSMUSP00000137025 ; ENSMUSG00000096770 .
    GeneIDi 100043684.
    100043686.
    100043688.
    109959.
    KEGGi mmu:100043684.
    mmu:100043686.
    mmu:100043688.
    mmu:109959.
    UCSCi uc008rav.2. mouse.

    Organism-specific databases

    CTDi 100043684.
    100043686.
    100043688.
    109959.
    MGIi MGI:88020. Amy2.

    Phylogenomic databases

    eggNOGi COG0366.
    GeneTreei ENSGT00390000002882.
    HOGENOMi HOG000253313.
    HOVERGENi HBG000061.
    InParanoidi Q4VBW6.
    KOi K01176.
    OMAi SNTYITA.
    OrthoDBi EOG7RJPR2.
    TreeFami TF312850.

    Enzyme and pathway databases

    Reactomei REACT_217960. Digestion of dietary carbohydrate.

    Miscellaneous databases

    NextBioi 456822.
    PROi P00688.
    SOURCEi Search...

    Gene expression databases

    Genevestigatori P00688.

    Family and domain databases

    Gene3Di 2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    InterProi IPR006048. A-amylase_b_C.
    IPR006046. Alpha_amylase.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    [Graphical view ]
    PRINTSi PR00110. ALPHAAMYLASE.
    SMARTi SM00642. Aamy. 1 hit.
    SM00632. Aamy_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Tissue-specific expression of mouse-alpha-amylase genes: nucleotide sequence of isoenzyme mRNAs from pancreas and salivary gland."
      Hagenbuechle O., Bovey R., Young R.A.
      Cell 21:179-187(1980) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    2. "Multiple non-allelic genes encoding pancreatic alpha-amylase of mouse are expressed in a strain-specific fashion."
      Tosi M., Bovey R., Astolfi S., Bodary S., Meisler M.H., Wellauer P.K.
      EMBO J. 3:2809-2816(1984) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOZYMES A1; B(A) AND B(C)).
      Strain: CE/J.
    3. "The transcriptional landscape of the mammalian genome."
      Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
      , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
      Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: C57BL/6J.
      Tissue: Ovary and Uterus.
    4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: Pancreas.
    5. "The mouse alpha-amylase multigene family. Sequence organization of members expressed in the pancreas, salivary gland and liver."
      Schibler U., Pittet A.-C., Young R.A., Hagenbuechle O., Tosi M., Gellman S., Wellauer P.K.
      J. Mol. Biol. 155:247-266(1982) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-94 AND 267-290.
      Strain: A/J.
    6. "Members of the Amy-2 alpha-amylase gene family of mouse strain CE/J contain duplicated 5' termini."
      Bodary S., Grossi G., Hagenbuechle O., Wellauer P.K.
      J. Mol. Biol. 182:1-10(1985) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-94.
    7. "Tissue-specific and insulin-dependent expression of a pancreatic amylase gene in transgenic mice."
      Osborn L., Rosenberg M.P., Keller S.A., Meisler M.H.
      Mol. Cell. Biol. 7:326-334(1987) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-94 (ISOZYMES AMY-2.1Y AND AMY-2.2Y).
    8. "Evolution of the amylase multigene family. YBR/Ki mice express a pancreatic amylase gene which is silent in other strains."
      Gumucio D.L., Wiebauer K., Dranginis A., Samuelson L.C., Treisman L.O., Caldwell R.M., Antonucci T.K., Meisler M.H.
      J. Biol. Chem. 260:13483-13489(1985) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] OF 267-289 AND 388-470 (ISOZYMES A1 AND B1).
      Strain: YRB/KI.
    9. "Characterization of the amino termini of mouse salivary and pancreatic amylases."
      Karn R.C., Petersen T.E., Hjorth J.P., Nieles J.T., Roepstorff P.
      FEBS Lett. 126:293-296(1981) [PubMed] [Europe PMC] [Abstract]
      Cited for: SIGNAL SEQUENCE CLEAVAGE SITE, PYROGLUTAMATE FORMATION AT GLN-16.
    10. "Two distinct pancreatic amylase genes are active in YBR mice."
      Strahler J.R., Meisler M.
      Genetics 101:91-102(1982) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 407-458.
      Strain: YBR.

    Entry informationi

    Entry nameiAMYP_MOUSE
    AccessioniPrimary (citable) accession number: P00688
    Secondary accession number(s): Q4VBW6
    , Q61295, Q61296, Q64301
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 21, 1986
    Last sequence update: July 27, 2011
    Last modified: October 1, 2014
    This is version 145 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    2. MGD cross-references
      Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3