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P00433

- PER1A_ARMRU

UniProt

P00433 - PER1A_ARMRU

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Protein
Peroxidase C1A
Gene
PRXC1A, HPRC1
Organism
Armoracia rusticana (Horseradish) (Armoracia laphatifolia)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at protein leveli

Functioni

Removal of H2O2, oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.

Catalytic activityi

2 phenolic donor + H2O2 = 2 phenoxyl radical of the donor + 2 H2O.

Cofactori

Binds 2 calcium ions per subunit.
Binds 1 heme B (iron-protoporphyrin IX) group per subunit.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sitei68 – 681Transition state stabilizer
Active sitei72 – 721Proton acceptor
Metal bindingi73 – 731Calcium 1
Metal bindingi76 – 761Calcium 1; via carbonyl oxygen
Metal bindingi78 – 781Calcium 1; via carbonyl oxygen
Metal bindingi80 – 801Calcium 1
Metal bindingi82 – 821Calcium 1
Metal bindingi94 – 941Calcium 1
Binding sitei169 – 1691Substrate; via carbonyl oxygen
Metal bindingi200 – 2001Iron (heme axial ligand)
Metal bindingi201 – 2011Calcium 2
Metal bindingi252 – 2521Calcium 2
Metal bindingi255 – 2551Calcium 2
Metal bindingi260 – 2601Calcium 2

GO - Molecular functioni

  1. heme binding Source: InterPro
  2. metal ion binding Source: UniProtKB-KW
  3. peroxidase activity Source: UniProtKB-KW
Complete GO annotation...

GO - Biological processi

  1. hydrogen peroxide catabolic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase, Peroxidase

Keywords - Biological processi

Hydrogen peroxide

Keywords - Ligandi

Calcium, Heme, Iron, Metal-binding

Enzyme and pathway databases

SABIO-RKP00433.

Protein family/group databases

PeroxiBasei90. AruPrx01-1.

Names & Taxonomyi

Protein namesi
Recommended name:
Peroxidase C1A (EC:1.11.1.7)
Gene namesi
Name:PRXC1A
Synonyms:HPRC1
OrganismiArmoracia rusticana (Horseradish) (Armoracia laphatifolia)
Taxonomic identifieri3704 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCardamineaeArmoracia

Subcellular locationi

Secreted Inferred. Vacuole Inferred
Note: Carboxy-terminal extension appears to target the protein to vacuoles.

GO - Cellular componenti

  1. extracellular region Source: UniProtKB-SubCell
  2. vacuole Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Secreted, Vacuole

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 30301 Publication
Add
BLAST
Chaini31 – 338308Peroxidase C1A1 Publication
PRO_0000023739Add
BLAST
Propeptidei339 – 35315
PRO_0000023740Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei31 – 311Pyrrolidone carboxylic acid1 Publication
Disulfide bondi41 ↔ 1211 Publication
Glycosylationi43 – 431N-linked (GlcNAc...)1 Publication
Disulfide bondi74 ↔ 791 Publication
Glycosylationi87 – 871N-linked (GlcNAc...)1 Publication
Disulfide bondi127 ↔ 331
Glycosylationi188 – 1881N-linked (GlcNAc...)
Disulfide bondi207 ↔ 239
Glycosylationi216 – 2161N-linked (GlcNAc...)
Glycosylationi228 – 2281N-linked (GlcNAc...)
Glycosylationi244 – 2441N-linked (GlcNAc...)
Glycosylationi285 – 2851N-linked (GlcNAc...)
Glycosylationi298 – 2981N-linked (GlcNAc...)

Keywords - PTMi

Disulfide bond, Glycoprotein, Pyrrolidone carboxylic acid

PTM databases

UniCarbKBiP00433.

Interactioni

Subunit structurei

Monomer.

Structurei

Secondary structure

Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Turni34 – 407
Helixi44 – 5815
Helixi62 – 7413
Turni75 – 773
Beta strandi78 – 814
Helixi82 – 843
Beta strandi89 – 913
Helixi94 – 963
Turni98 – 1036
Helixi107 – 12014
Turni122 – 1243
Helixi127 – 14115
Helixi161 – 1677
Helixi175 – 18410
Helixi190 – 1978
Helixi198 – 2014
Beta strandi204 – 2063
Helixi207 – 2104
Helixi211 – 2155
Helixi217 – 2193
Beta strandi220 – 2223
Helixi229 – 23810
Beta strandi248 – 2514
Beta strandi253 – 2553
Helixi262 – 2687
Helixi275 – 2828
Turni284 – 2885
Helixi289 – 29810
Helixi300 – 31415
Beta strandi324 – 3263

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1ATJX-ray2.15A/B/C/D/E/F31-336[»]
1GW2X-ray2.15A31-338[»]
1GWOX-ray2.07A31-338[»]
1GWTX-ray1.70A31-338[»]
1GWUX-ray1.31A31-338[»]
1GX2X-ray2.20A/B31-338[»]
1H55X-ray1.61A31-338[»]
1H57X-ray1.60A31-338[»]
1H58X-ray1.70A31-338[»]
1H5AX-ray1.60A31-338[»]
1H5CX-ray1.62A31-338[»]
1H5DX-ray1.60A31-338[»]
1H5EX-ray1.60A31-338[»]
1H5FX-ray1.60A31-338[»]
1H5GX-ray1.57A31-338[»]
1H5HX-ray1.60A31-338[»]
1H5IX-ray1.60A31-338[»]
1H5JX-ray1.60A31-338[»]
1H5KX-ray1.60A31-338[»]
1H5LX-ray1.60A31-338[»]
1H5MX-ray1.57A31-338[»]
1HCHX-ray1.57A31-336[»]
1KZMX-ray2.00A31-338[»]
1W4WX-ray1.55A31-353[»]
1W4YX-ray1.60A31-353[»]
2ATJX-ray2.00A/B31-337[»]
2YLJX-ray1.69A31-336[»]
3ATJX-ray2.20A/B31-338[»]
4ATJX-ray2.50A/B31-338[»]
6ATJX-ray2.00A31-338[»]
7ATJX-ray1.47A31-338[»]
ProteinModelPortaliP00433.
SMRiP00433. Positions 31-337.

Miscellaneous databases

EvolutionaryTraceiP00433.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal

Family and domain databases

InterProiIPR010255. Haem_peroxidase.
IPR002016. Haem_peroxidase_pln/fun/bac.
IPR000823. Peroxidase_pln.
IPR019794. Peroxidases_AS.
IPR019793. Peroxidases_heam-ligand_BS.
[Graphical view]
PfamiPF00141. peroxidase. 1 hit.
[Graphical view]
PRINTSiPR00458. PEROXIDASE.
PR00461. PLPEROXIDASE.
SUPFAMiSSF48113. SSF48113. 1 hit.
PROSITEiPS00435. PEROXIDASE_1. 1 hit.
PS00436. PEROXIDASE_2. 1 hit.
PS50873. PEROXIDASE_4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P00433-1 [UniParc]FASTAAdd to Basket

« Hide

MHFSSSSTLF TCITLIPLVC LILHASLSDA QLTPTFYDNS CPNVSNIVRD    50
TIVNELRSDP RIAASILRLH FHDCFVNGCD ASILLDNTTS FRTEKDAFGN 100
ANSARGFPVI DRMKAAVESA CPRTVSCADL LTIAAQQSVT LAGGPSWRVP 150
LGRRDSLQAF LDLANANLPA PFFTLPQLKD SFRNVGLNRS SDLVALSGGH 200
TFGKNQCRFI MDRLYNFSNT GLPDPTLNTT YLQTLRGLCP LNGNLSALVD 250
FDLRTPTIFD NKYYVNLEEQ KGLIQSDQEL FSSPNATDTI PLVRSFANST 300
QTFFNAFVEA MDRMGNITPL TGTQGQIRLN CRVVNSNSLL HDMVEVVDFV 350
SSM 353
Length:353
Mass (Da):38,825
Last modified:April 1, 1990 - v2
Checksum:iAC916C03C4A24D27
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M37156 Genomic DNA. Translation: AAA33377.1.
PIRiS00625. OPRHC.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M37156 Genomic DNA. Translation: AAA33377.1 .
PIRi S00625. OPRHC.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1ATJ X-ray 2.15 A/B/C/D/E/F 31-336 [» ]
1GW2 X-ray 2.15 A 31-338 [» ]
1GWO X-ray 2.07 A 31-338 [» ]
1GWT X-ray 1.70 A 31-338 [» ]
1GWU X-ray 1.31 A 31-338 [» ]
1GX2 X-ray 2.20 A/B 31-338 [» ]
1H55 X-ray 1.61 A 31-338 [» ]
1H57 X-ray 1.60 A 31-338 [» ]
1H58 X-ray 1.70 A 31-338 [» ]
1H5A X-ray 1.60 A 31-338 [» ]
1H5C X-ray 1.62 A 31-338 [» ]
1H5D X-ray 1.60 A 31-338 [» ]
1H5E X-ray 1.60 A 31-338 [» ]
1H5F X-ray 1.60 A 31-338 [» ]
1H5G X-ray 1.57 A 31-338 [» ]
1H5H X-ray 1.60 A 31-338 [» ]
1H5I X-ray 1.60 A 31-338 [» ]
1H5J X-ray 1.60 A 31-338 [» ]
1H5K X-ray 1.60 A 31-338 [» ]
1H5L X-ray 1.60 A 31-338 [» ]
1H5M X-ray 1.57 A 31-338 [» ]
1HCH X-ray 1.57 A 31-336 [» ]
1KZM X-ray 2.00 A 31-338 [» ]
1W4W X-ray 1.55 A 31-353 [» ]
1W4Y X-ray 1.60 A 31-353 [» ]
2ATJ X-ray 2.00 A/B 31-337 [» ]
2YLJ X-ray 1.69 A 31-336 [» ]
3ATJ X-ray 2.20 A/B 31-338 [» ]
4ATJ X-ray 2.50 A/B 31-338 [» ]
6ATJ X-ray 2.00 A 31-338 [» ]
7ATJ X-ray 1.47 A 31-338 [» ]
ProteinModelPortali P00433.
SMRi P00433. Positions 31-337.
ModBasei Search...

Protein family/group databases

PeroxiBasei 90. AruPrx01-1.

PTM databases

UniCarbKBi P00433.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Enzyme and pathway databases

SABIO-RK P00433.

Miscellaneous databases

EvolutionaryTracei P00433.

Family and domain databases

InterProi IPR010255. Haem_peroxidase.
IPR002016. Haem_peroxidase_pln/fun/bac.
IPR000823. Peroxidase_pln.
IPR019794. Peroxidases_AS.
IPR019793. Peroxidases_heam-ligand_BS.
[Graphical view ]
Pfami PF00141. peroxidase. 1 hit.
[Graphical view ]
PRINTSi PR00458. PEROXIDASE.
PR00461. PLPEROXIDASE.
SUPFAMi SSF48113. SSF48113. 1 hit.
PROSITEi PS00435. PEROXIDASE_1. 1 hit.
PS00436. PEROXIDASE_2. 1 hit.
PS50873. PEROXIDASE_4. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Covalent structure of the glycoprotein horseradish peroxidase (EC 1.11.1.7)."
    Welinder K.G.
    FEBS Lett. 72:19-23(1976) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 31-338.
  3. "Crystal structure of horseradish peroxidase C at 2.15-A resolution."
    Gajhede M., Schuller D.J., Henriksen A., Smith A.T., Poulos T.L.
    Nat. Struct. Biol. 4:1032-1038(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.15 ANGSTROMS).
  4. "Structural interactions between horseradish peroxidase C and the substrate benzhydroxamic acid determined by X-ray crystallography."
    Henriksen A., Schuller D.J., Meno K., Welinder K.G., Smith A.T., Gajhede M.
    Biochemistry 37:8054-8060(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS).
  5. Meno K., White C.G., Smith A.T., Gajhede M.
    Submitted (DEC-1998) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.2 ANGSTROMS).

Entry informationi

Entry nameiPER1A_ARMRU
AccessioniPrimary (citable) accession number: P00433
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: April 1, 1990
Last modified: February 19, 2014
This is version 112 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Direct protein sequencing

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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