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Reviewed, UniProtKB/Swiss-Prot P00367 (DHE3_HUMAN)

Last modified November 3, 2009. Version 121. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (6) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Web resources · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Glutamate dehydrogenase 1, mitochondrial
      Short name=GDH
    EC=1.4.1.3
Gene names
Name: GLUD1
Synonyms: GLUD
OrganismHomo sapiens (Human) [Complete proteome]
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length558 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level.

General annotation (Comments)

Function

May be involved in learning and memory reactions by increasing the turnover of the excitatory neurotransmitter glutamate By similarity.

Catalytic activity

L-glutamate + H2O + NAD(P)+ = 2-oxoglutarate + NH3 + NAD(P)H.

Enzyme regulation

Subject to allosteric regulation. Activated by ADP. Inhibited by GTP and ATP. ADP can occupy the NADH binding site and activate the enzyme.

Subunit structure

Homohexamer.

Subcellular location

Mitochondrion matrix.

Involvement in disease

Defects in GLUD1 are the cause of hyperinsulinism-hyperammonemia syndrome (HHS) [MIM:606762]. Elevated oxidation rate of glutamate to alpha-ketoglutarate stimulates insulin secretion in the pancreatic beta cells, while they impair detoxification of ammonium in the liver. Ref.20 Ref.21 Ref.22 Ref.23

Sequence similarities

Belongs to the Glu/Leu/Phe/Val dehydrogenases family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Transit peptide1 – 5353Mitochondrion Ref.8 Ref.9
Chain54 – 558505Glutamate dehydrogenase 1, mitochondrial
PRO_0000007206

Regions

Nucleotide binding141 – 1433NAD By similarity

Sites

Active site1831
Binding site1471Substrate By similarity
Binding site1711Substrate By similarity
Binding site1761NAD By similarity
Binding site2521NAD By similarity
Binding site2661GTP By similarity
Binding site2701GTP By similarity
Binding site3191GTP By similarity
Binding site3221GTP By similarity
Binding site4381Substrate By similarity
Binding site4441NAD By similarity
Binding site4501ADP By similarity
Binding site5161ADP By similarity

Amino acid modifications

Modified residue841N6-acetyllysine Ref.13
Modified residue1351Phosphotyrosine By similarity
Modified residue2271Phosphoserine By similarity
Modified residue4501Phosphoserine By similarity
Modified residue4801N6-acetyllysine Ref.13
Modified residue5031N6-acetyllysine Ref.13
Modified residue5121Phosphotyrosine By similarity
Modified residue5271N6-acetyllysine By similarity

Natural variations

Natural variant2701S → C in HHS; diminished sensitivity to GTP. Ref.23
VAR_016760
Natural variant2741R → C in HHS; diminished sensitivity to GTP. Ref.22 Ref.23
VAR_016761
Natural variant3181R → K in HHS. Ref.21
VAR_009270
Natural variant3181R → T in HHS; diminished sensitivity to GTP. Ref.23
VAR_016762
Natural variant3191Y → C in HHS. Ref.23
VAR_016763
Natural variant3221R → C in HHS; diminished sensitivity to GTP. Ref.23
VAR_016764
Natural variant3221R → H in HHS; diminished sensitivity to GTP. Ref.22 Ref.23
VAR_016765
Natural variant3491E → A in HHS. Ref.21
VAR_009271
Natural variant4981S → L in HHS. Ref.20
VAR_008666
Natural variant4991G → D in HHS. Ref.20
VAR_008667
Natural variant4991G → S in HHS. Ref.20
VAR_008668
Natural variant5011S → P in HHS. Ref.20
VAR_008669
Natural variant5071H → Y in HHS; abolishes inhibition by ATP; no effect on activation by ADP. Ref.20 Ref.14 Ref.15
VAR_008670

Experimental info

Mutagenesis5011S → A: Reduces activity and inhibition by GTP. Ref.15
Mutagenesis5071H → A: Strongly reduces inhibition by GTP.
Mutagenesis5161R → A: Abolishes activation by ADP. Ref.15

Secondary structure

.................................................................................. 558
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P00367-1 [UniParc].

Last modified January 1, 1990. Version 2.
Checksum: A7319A840F57FBB2

FASTA55861,398
        10         20         30         40         50         60 
MYRYLGEALL LSRAGPAALG SASADSAALL GWARGQPAAA PQPGLALAAR RHYSEAVADR 

        70         80         90        100        110        120 
EDDPNFFKMV EGFFDRGASI VEDKLVEDLR TRESEEQKRN RVRGILRIIK PCNHVLSLSF 

       130        140        150        160        170        180 
PIRRDDGSWE VIEGYRAQHS QHRTPCKGGI RYSTDVSVDE VKALASLMTY KCAVVDVPFG 

       190        200        210        220        230        240 
GAKAGVKINP KNYTDNELEK ITRRFTMELA KKGFIGPGID VPAPDMSTGE REMSWIADTY 

       250        260        270        280        290        300 
ASTIGHYDIN AHACVTGKPI SQGGIHGRIS ATGRGVFHGI ENFINEASYM SILGMTPGFG 

       310        320        330        340        350        360 
DKTFVVQGFG NVGLHSMRYL HRFGAKCIAV GESDGSIWNP DGIDPKELED FKLQHGSILG 

       370        380        390        400        410        420 
FPKAKPYEGS ILEADCDILI PAASEKQLTK SNAPRVKAKI IAEGANGPTT PEADKIFLER 

       430        440        450        460        470        480 
NIMVIPDLYL NAGGVTVSYF EWLKNLNHVS YGRLTFKYER DSNYHLLMSV QESLERKFGK 

       490        500        510        520        530        540 
HGGTIPIVPT AEFQDRISGA SEKDIVHSGL AYTMERSARQ IMRTAMKYNL GLDLRTAAYV 

       550 
NAIEKVFKVY NEAGVTFT 

« Hide

References

« Hide 'large scale' references
[1]"Comparison of human brain and liver glutamate dehydrogenase cDNAS."
Nakatani Y., Banner C., von Herrat M., Schneider M.E., Smith H.H., Freese E.
Biochem. Biophys. Res. Commun. 149:405-410(1987) [PubMed: 3426581] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
Tissue: Brain and Liver.
[2]"Molecular cloning and nucleotide sequence of the cDNA for human liver glutamate dehydrogenase precursor."
Amuro N., Yamaura M., Goto Y., Okazaki T.
Biochem. Biophys. Res. Commun. 152:1395-1400(1988) [PubMed: 3377777] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
Tissue: Liver.
[3]"Complete nucleotide sequence of human glutamate dehydrogenase cDNA."
Nakatani Y., Schneider M.E., Banner C., Freese E.
Nucleic Acids Res. 16:6237-6237(1988) [PubMed: 3399399] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
[4]"Isolation and characterization of cDNA clones encoding human liver glutamate dehydrogenase: evidence for a small gene family."
Mavrothalassitis G., Tzimagiorgis G., Mitsialis A., Zannis V., Plaitakis A., Papamatheakis J., Moschonas N.
Proc. Natl. Acad. Sci. U.S.A. 85:3494-3498(1988) [PubMed: 3368458] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
Tissue: Liver.
[5]"The human glutamate dehydrogenase gene family: gene organization and structural characterization."
Michaelidis T.M., Tzimagiorgis G., Moschonas N.K., Papamatheakis J.
Genomics 16:150-160(1993) [PubMed: 8486350] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Tissue: Placenta.
[6]"The DNA sequence and comparative analysis of human chromosome 10."
Deloukas P., Earthrowl M.E., Grafham D.V., Rubenfield M., French L., Steward C.A., Sims S.K., Jones M.C., Searle S., Scott C., Howe K., Hunt S.E., Andrews T.D., Gilbert J.G.R., Swarbreck D., Ashurst J.L., Taylor A., Battles J. expand/collapse author list , Bird C.P., Ainscough R., Almeida J.P., Ashwell R.I.S., Ambrose K.D., Babbage A.K., Bagguley C.L., Bailey J., Banerjee R., Bates K., Beasley H., Bray-Allen S., Brown A.J., Brown J.Y., Burford D.C., Burrill W., Burton J., Cahill P., Camire D., Carter N.P., Chapman J.C., Clark S.Y., Clarke G., Clee C.M., Clegg S., Corby N., Coulson A., Dhami P., Dutta I., Dunn M., Faulkner L., Frankish A., Frankland J.A., Garner P., Garnett J., Gribble S., Griffiths C., Grocock R., Gustafson E., Hammond S., Harley J.L., Hart E., Heath P.D., Ho T.P., Hopkins B., Horne J., Howden P.J., Huckle E., Hynds C., Johnson C., Johnson D., Kana A., Kay M., Kimberley A.M., Kershaw J.K., Kokkinaki M., Laird G.K., Lawlor S., Lee H.M., Leongamornlert D.A., Laird G., Lloyd C., Lloyd D.M., Loveland J., Lovell J., McLaren S., McLay K.E., McMurray A., Mashreghi-Mohammadi M., Matthews L., Milne S., Nickerson T., Nguyen M., Overton-Larty E., Palmer S.A., Pearce A.V., Peck A.I., Pelan S., Phillimore B., Porter K., Rice C.M., Rogosin A., Ross M.T., Sarafidou T., Sehra H.K., Shownkeen R., Skuce C.D., Smith M., Standring L., Sycamore N., Tester J., Thorpe A., Torcasso W., Tracey A., Tromans A., Tsolas J., Wall M., Walsh J., Wang H., Weinstock K., West A.P., Willey D.L., Whitehead S.L., Wilming L., Wray P.W., Young L., Chen Y., Lovering R.C., Moschonas N.K., Siebert R., Fechtel K., Bentley D., Durbin R.M., Hubbard T., Doucette-Stamm L., Beck S., Smith D.R., Rogers J.
Nature 429:375-381(2004) [PubMed: 15164054] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[7]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Duodenum and Eye.
[8]"Partial amino acid sequence of the glutamate dehydrogenase of human liver and a revision of the sequence of the bovine enzyme."
Julliard J.H., Smith E.L.
J. Biol. Chem. 254:3427-3438(1979) [PubMed: 429360] [Abstract]
Cited for: PROTEIN SEQUENCE OF 54-558.
Tissue: Liver.
[9]"Human liver protein map: a reference database established by microsequencing and gel comparison."
Hochstrasser D.F., Frutiger S., Paquet N., Bairoch A., Ravier F., Pasquali C., Sanchez J.-C., Tissot J.-D., Bjellqvist B., Vargas R., Appel R.D., Hughes G.J.
Electrophoresis 13:992-1001(1992) [PubMed: 1286669] [Abstract]
Cited for: PROTEIN SEQUENCE OF 54-69.
Tissue: Liver.
[10]"Isolation of a human brain cDNA for glutamate dehydrogenase."
Banner C., Silverman S., Thomas J.W., Lampel K.A., Vitkovic L., Huie D., Wenthold R.J.
J. Neurochem. 49:246-252(1987) [PubMed: 3585334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 301-558.
Tissue: Brain.
[11]Lubec G., Vishwanath V.
Submitted (MAR-2007) to UniProtKB
Cited for: PROTEIN SEQUENCE OF 481-496, MASS SPECTROMETRY.
Tissue: Brain and Cajal-Retzius cell.
[12]"Structure and expression analysis of a member of the human glutamate dehydrogenase (GLUD) gene family mapped to chromosome 10p11.2."
Tzimagiorgis G., Leversha M.A., Chroniary K., Goulielmos G., Sargent C.A., Ferguson-Smith M., Moschonas N.K.
Hum. Genet. 91:433-438(1993) [PubMed: 8314555] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 540-558.
[13]"Lysine acetylation targets protein complexes and co-regulates major cellular functions."
Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T., Olsen J.V., Mann M.
Science 325:834-840(2009) [PubMed: 19608861] [Abstract]
Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-84; LYS-480 AND LYS-503, MASS SPECTROMETRY.
[14]"Structures of bovine glutamate dehydrogenase complexes elucidate the mechanism of purine regulation."
Smith T.J., Peterson P.E., Schmidt T., Fang J., Stanley C.A.
J. Mol. Biol. 307:707-720(2001) [PubMed: 11254391] [Abstract]
Cited for: CHARACTERIZATION OF VARIANT TYR-507, ALLOSTERIC REGULATION.
[15]"Expression, purification and characterization of human glutamate dehydrogenase (GDH) allosteric regulatory mutations."
Fang J., Hsu B.Y.L., MacMullen C.M., Poncz M., Smith T.J., Stanley C.A.
Biochem. J. 363:81-87(2002) [PubMed: 11903050] [Abstract]
Cited for: MUTAGENESIS OF SER-501 AND ARG-516, CHARACTERIZATION OF VARIANT TYR-507, ALLOSTERIC REGULATION.
[16]Colinge J., Superti-Furga G., Bennett K.L.
Submitted (OCT-2008) to UniProtKB
Cited for: IDENTIFICATION [LARGE SCALE ANALYSIS], MASS SPECTROMETRY.
[17]"The structure of apo human glutamate dehydrogenase details subunit communication and allostery."
Smith T.J., Schmidt T., Fang J., Wu J., Siuzdak G., Stanley C.A.
J. Mol. Biol. 318:765-777(2002) [PubMed: 12054821] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.7 ANGSTROMS) OF 54-558.
[18]"Structural studies on ADP activation of mammalian glutamate dehydrogenase and the evolution of regulation."
Banerjee S., Schmidt T., Fang J., Stanley C.A., Smith T.J.
Biochemistry 42:3446-3456(2003) [PubMed: 12653548] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.3 ANGSTROMS) OF 63-558 OF MUTANT ALA-516, ALLOSTERIC REGULATION.
[19]"Congenital hyperinsulinism: molecular basis of a heterogeneous disease."
Meissner T., Beinbrech B., Mayatepek E.
Hum. Mutat. 13:351-361(1999) [PubMed: 10338089] [Abstract]
Cited for: REVIEW ON VARIANTS.
[20]"Hyperinsulinism and hyperammonemia in infants with regulatory mutations of the glutamate dehydrogenase gene."
Stanley C.A., Lieu Y.K., Hsu B.Y.L., Burlina A.B., Greenberg C.R., Hopwood N.J., Perlman K., Rich B.H., Zammarchi E., Poncz M.
N. Engl. J. Med. 338:1352-1357(1998) [PubMed: 9571255] [Abstract]
Cited for: VARIANTS HHS LEU-498; SER-499; ASP-499; PRO-501 AND TYR-507.
[21]"Novel missense mutations in the glutamate dehydrogenase gene in the congenital hyperinsulinism-hyperammonemia syndrome."
Miki Y., Taki T., Ohura T., Kato H., Yanagisawa M., Hayashi Y.
J. Pediatr. 136:69-72(2000) [PubMed: 10636977] [Abstract]
Cited for: VARIANTS HHS LYS-318 AND ALA-349.
[22]"Novel missense mutations outside the allosteric domain of glutamate dehydrogenase are prevalent in European patients with the congenital hyperinsulinism-hyperammonemia syndrome."
Santer R., Kinner M., Passarge M., Superti-Furga A., Mayatepek E., Meissner T., Schneppenheim R., Schaub J.
Hum. Genet. 108:66-71(2001) [PubMed: 11214910] [Abstract]
Cited for: VARIANTS HHS CYS-274 AND HIS-322.
[23]"Hyperinsulinism/hyperammonemia syndrome in children with regulatory mutations in the inhibitory guanosine triphosphate-binding domain of glutamate dehydrogenase."
MacMullen C., Fang J., Hsu B.Y.L., Kelly A., de Lonlay-Debeney P., Saudubray J.-M., Ganguly A., Smith T.J., Stanley C.A., Brown R., Buist N., Dasouki M., Fefferman R., Grange D., Karaviti L., Luedke C., Marriage B., McLaughlin J. expand/collapse author list , Perlman K., Seashore M., van Vliet G.
J. Clin. Endocrinol. Metab. 86:1782-1787(2001) [PubMed: 11297618] [Abstract]
Cited for: VARIANTS HHS CYS-270; CYS-274; THR-318; CYS-319; CYS-322 AND HIS-322.
+Additional computationally mapped references.

Web resources

GeneReviews
Wikipedia

Glutamate dehydrogenase 1 entry

Cross-references

Sequence databases

X07674 mRNA. Translation: CAA30521.1.
M20867 mRNA. Translation: AAA52526.1.
M37154 mRNA. Translation: AAA52525.1.
X07769 mRNA. Translation: CAA30598.1.
J03248 mRNA. Translation: AAA52523.1.
X66300 expand/collapse EMBL AC list , X66301, X66302, X66303, X66304, X66305, X66306, X66307, X66308, X66309, X66311, X66312 Genomic DNA. Translation: CAA46994.2.
AL136982 Genomic DNA. Translation: CAI17120.1.
BC040132 mRNA. Translation: AAH40132.1.
BC112946 mRNA. Translation: AAI12947.1.
X67491 Genomic DNA. Translation: CAA47830.1.
IPIIPI00016801.
PIRDEHUE. A28208.
I37424.
S29331.
S60192.
RefSeqNP_005262.1.
UniGeneHs.500409

3D structure databases

EntryMethodResolution (Å)ChainPositionsPDBsum
1L1FX-ray2.70A/B/C/D/E/F54-558[»]
1NR1X-ray3.30A/B/C/D/E/F63-558[»]
ModBaseSearch...

Protein-protein interaction databases

IntActP00367. 3 interactions.
STRINGP00367.

PTM databases

PhosphoSiteP00367.

2-D gel databases

SWISS-2DPAGEP00367.
REPRODUCTION-2DPAGEIPI00016801.
Siena-2DPAGEP00367.

Proteomic databases

PeptideAtlasP00367.
PRIDEP00367.

Genome annotation databases

EnsemblENST00000277865; ENSP00000277865; ENSG00000148672; Homo sapiens. [Genome view]
ENST00000394415; ENSP00000377937; ENSG00000148672; Homo sapiens. [Genome view]
GeneID2746.
KEGGhsa:2746.
NMPDRfig|9606.3.peg.4285.
UCSCuc001keh.1. human.

Organism-specific databases

CTD2746.
GeneCardsGC10M088800.
H-InvDBHIX0009003.
HIX0035678.
HGNCHGNC:4335. GLUD1.
MIM138130. gene.
606762. phenotype.
Orphanet657. Persistent hyperinsulinemic hypoglycemia of infancy.
PharmGKBPA28737.
GenAtlasSearch...

Phylogenomic databases

HOGENOMP00367.
HOVERGENP00367.
OMARIQAKII.

Enzyme and pathway databases

BioCycMetaCyc:MON-11464.
BRENDA1.4.1.3. 247.
ReactomeREACT_13. Metabolism of amino acids.

Gene expression databases

BgeeP00367.
CleanExHS_GLUD1.
GenevestigatorP00367.
GermOnlineENSG00000148672. Homo sapiens.

Family and domain databases

InterProIPR006095. Glu/Leu/Phe/Val_DH.
IPR006096. Glu/Leu/Phe/Val_DH_C.
IPR006097. Glu/Leu/Phe/Val_DH_dimer.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
Gene3DG3DSA:3.40.50.720. NAD(P)-bd. 1 hit.
PANTHERPTHR11606:SF2. GLFV_DH. 1 hit.
PfamPF00208. ELFV_dehydrog. 1 hit.
PF02812. ELFV_dehydrog_N. 1 hit.
[Graphical view]
PRINTSPR00082. GLFDHDRGNASE.
PROSITEPS00074. GLFV_DEHYDROGENASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Other Resources

DrugBankDB00142. L-Glutamic Acid.
DB00157. NADH.
NextBio10824.
SOURCESearch...

Entry information

Entry nameDHE3_HUMAN
AccessionPrimary (citable) accession number: P00367
Secondary accession number(s): Q5TBU3
Entry history
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: January 1, 1990
Last modified: November 3, 2009
This is version 121 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHPI (Human Proteome Initiative)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Relevant documents

Human chromosome 10

Human chromosome 10: entries, gene names and cross-references to MIM

Human entries with polymorphisms or disease mutations

List of human entries with polymorphisms or disease mutations

Human polymorphisms and disease mutations

Index of human polymorphisms and disease mutations

MIM cross-references

Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Web resources · Cross-references · Entry information · Relevant documents