Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

P00270

- RUBR_DESGI

UniProt

P00270 - RUBR_DESGI

Protein

Rubredoxin

Gene
N/A
Organism
Desulfovibrio gigas
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at protein leveli
  1. Functioni

    Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
    Electron acceptor for cytoplasmic lactate dehydrogenase.

    Cofactori

    Binds 1 Fe3+ ion per subunit.

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi6 – 61Iron1 PublicationPROSITE-ProRule annotation
    Metal bindingi9 – 91Iron1 PublicationPROSITE-ProRule annotation
    Metal bindingi39 – 391Iron1 PublicationPROSITE-ProRule annotation
    Metal bindingi42 – 421Iron1 PublicationPROSITE-ProRule annotation

    GO - Molecular functioni

    1. electron carrier activity Source: InterPro
    2. iron ion binding Source: InterPro

    GO - Biological processi

    1. oxidation-reduction process Source: UniProtKB-KW

    Keywords - Biological processi

    Electron transport, Transport

    Keywords - Ligandi

    Iron, Metal-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Rubredoxin
    Short name:
    Rd
    OrganismiDesulfovibrio gigas
    Taxonomic identifieri879 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrio

    Subcellular locationi

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 5252RubredoxinPRO_0000135037Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei1 – 11N-formylmethionine2 Publications

    Keywords - PTMi

    Formylation

    Structurei

    Secondary structure

    1
    52
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi4 – 63
    Turni7 – 93
    Turni15 – 173
    Helixi20 – 223
    Helixi30 – 323
    Turni40 – 423
    Helixi46 – 483
    Beta strandi49 – 513

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1E8JNMR-A1-52[»]
    1RDGX-ray1.40A1-52[»]
    1SPWNMR-A1-52[»]
    2DSXX-ray0.68A1-52[»]
    ProteinModelPortaliP00270.
    SMRiP00270. Positions 1-52.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP00270.

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini1 – 5252Rubredoxin-likePROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the rubredoxin family.Curated
    Contains 1 rubredoxin-like domain.PROSITE-ProRule annotation

    Family and domain databases

    Gene3Di2.20.28.10. 1 hit.
    InterProiIPR024922. Rubredoxin.
    IPR024934. Rubredoxin-like_dom.
    IPR004039. Rubredoxin-type_fold.
    IPR024935. Rubredoxin_dom.
    IPR018527. Rubredoxin_Fe_BS.
    [Graphical view]
    PfamiPF00301. Rubredoxin. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000071. Rubredoxin. 1 hit.
    PRINTSiPR00163. RUBREDOXIN.
    PROSITEiPS00202. RUBREDOXIN. 1 hit.
    PS50903. RUBREDOXIN_LIKE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P00270-1 [UniParc]FASTAAdd to Basket

    « Hide

    MDIYVCTVCG YEYDPAKGDP DSGIKPGTKF EDLPDDWACP VCGASKDAFE   50
    KQ 52
    Length:52
    Mass (Da):5,677
    Last modified:July 21, 1986 - v1
    Checksum:i3E08147A4AC262F7
    GO

    Sequence databases

    PIRiA00275. RUDVEG.

    Cross-referencesi

    Sequence databases

    PIRi A00275. RUDVEG.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1E8J NMR - A 1-52 [» ]
    1RDG X-ray 1.40 A 1-52 [» ]
    1SPW NMR - A 1-52 [» ]
    2DSX X-ray 0.68 A 1-52 [» ]
    ProteinModelPortali P00270.
    SMRi P00270. Positions 1-52.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Miscellaneous databases

    EvolutionaryTracei P00270.

    Family and domain databases

    Gene3Di 2.20.28.10. 1 hit.
    InterProi IPR024922. Rubredoxin.
    IPR024934. Rubredoxin-like_dom.
    IPR004039. Rubredoxin-type_fold.
    IPR024935. Rubredoxin_dom.
    IPR018527. Rubredoxin_Fe_BS.
    [Graphical view ]
    Pfami PF00301. Rubredoxin. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000071. Rubredoxin. 1 hit.
    PRINTSi PR00163. RUBREDOXIN.
    PROSITEi PS00202. RUBREDOXIN. 1 hit.
    PS50903. RUBREDOXIN_LIKE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The amino acid sequence of rubredoxin from the sulfate reducing bacterium, Desulfovibrio gigas."
      Bruschi M.
      Biochem. Biophys. Res. Commun. 70:615-621(1976) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE, FORMYLATION AT MET-1.
    2. "Rubredoxin from Desulfovibrio gigas. A molecular model of the oxidized form at 1.4-A resolution."
      Frey M., Sieker L.C., Payan F., Haser R., Bruschi M., Pepe G., le Gall J.
      J. Mol. Biol. 197:525-541(1987) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (1.4 ANGSTROMS).

    Entry informationi

    Entry nameiRUBR_DESGI
    AccessioniPrimary (citable) accession number: P00270
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 21, 1986
    Last sequence update: July 21, 1986
    Last modified: October 1, 2014
    This is version 88 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Direct protein sequencing

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3