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Protein

Putidaredoxin

Gene

camB

Organism
Pseudomonas putida (Arthrobacter siderocapsulatus)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

The oxidation of camphor by cytochrome P450-CAM requires the participation of a flavoprotein, putidaredoxin reductase, and an iron-sulfur protein, putidaredoxin, to mediate the transfer of electrons from NADH to P450 for oxygen activation.

Cofactori

[2Fe-2S] clusterNote: Binds 1 [2Fe-2S] cluster.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi40Iron-sulfur (2Fe-2S)PROSITE-ProRule annotation1 Publication1
Metal bindingi46Iron-sulfur (2Fe-2S)PROSITE-ProRule annotation1 Publication1
Metal bindingi49Iron-sulfur (2Fe-2S)PROSITE-ProRule annotation1 Publication1
Metal bindingi87Iron-sulfur (2Fe-2S)PROSITE-ProRule annotation1 Publication1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Electron transport, Transport

Keywords - Ligandi

2Fe-2S, Iron, Iron-sulfur, Metal-binding

Enzyme and pathway databases

BioCyciMetaCyc:MONOMER-3502.

Names & Taxonomyi

Protein namesi
Recommended name:
Putidaredoxin
Short name:
PDX
Gene namesi
Name:camB
OrganismiPseudomonas putida (Arthrobacter siderocapsulatus)
Taxonomic identifieri303 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00002011622 – 107PutidaredoxinAdd BLAST106

Interactioni

Subunit structurei

Monomer.

Protein-protein interaction databases

DIPiDIP-29810N.

Structurei

Secondary structure

1107
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi3 – 7Combined sources5
Helixi9 – 11Combined sources3
Beta strandi13 – 17Combined sources5
Beta strandi20 – 23Combined sources4
Helixi24 – 30Combined sources7
Helixi34 – 36Combined sources3
Beta strandi38 – 40Combined sources3
Beta strandi42 – 46Combined sources5
Beta strandi50 – 53Combined sources4
Turni55 – 57Combined sources3
Helixi58 – 60Combined sources3
Helixi66 – 72Combined sources7
Beta strandi74 – 77Combined sources4
Beta strandi83 – 85Combined sources3
Helixi86 – 88Combined sources3
Helixi93 – 95Combined sources3
Beta strandi98 – 101Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1GPXNMR-A2-107[»]
1OQQX-ray1.47A/B2-107[»]
1OQRX-ray1.65A/B/C2-107[»]
1PDXNMR-A2-107[»]
1PUTNMR-A2-107[»]
1R7SX-ray1.91A/B/C2-107[»]
1XLNX-ray2.03A/B2-107[»]
1XLOX-ray1.84A/B2-107[»]
1XLPX-ray2.00A/B/C2-107[»]
1XLQX-ray1.45A/B/C2-107[»]
1YJINMR-A2-107[»]
1YJJNMR-A2-107[»]
2M56NMR-B2-107[»]
3LB8X-ray2.60C/D2-107[»]
3W9CX-ray2.50B2-107[»]
4JWSX-ray2.15C/D2-107[»]
4JWUX-ray2.20C/D1-107[»]
4JX1X-ray2.09C/D/G/H1-107[»]
ProteinModelPortaliP00259.
SMRiP00259.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP00259.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini2 – 1062Fe-2S ferredoxin-typePROSITE-ProRule annotationAdd BLAST105

Sequence similaritiesi

Belongs to the adrenodoxin/putidaredoxin family.Curated
Contains 1 2Fe-2S ferredoxin-type domain.PROSITE-ProRule annotation

Family and domain databases

CDDicd00207. fer2. 1 hit.
Gene3Di3.10.20.30. 1 hit.
InterProiIPR001041. 2Fe-2S_ferredoxin-type.
IPR001055. Adrenodoxin.
IPR018298. Adrenodoxin_Fe-S_BS.
IPR012675. Beta-grasp_dom.
[Graphical view]
PfamiPF00111. Fer2. 1 hit.
[Graphical view]
PRINTSiPR00355. ADRENODOXIN.
SUPFAMiSSF54292. SSF54292. 1 hit.
PROSITEiPS51085. 2FE2S_FER_2. 1 hit.
PS00814. ADX. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P00259-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKVVYVSHD GTRRELDVAD GVSLMQAAVS NGIYDIVGDC GGSASCATCH
60 70 80 90 100
VYVNEAFTDK VPAANEREIG MLECVTAELK PNSRLCCQII MTPELDGIVV

DVPDRQW
Length:107
Mass (Da):11,550
Last modified:January 23, 2007 - v3
Checksum:iF487E481F8BEE2C9
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti15E → Q AA sequence (PubMed:4833743).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J05406 Genomic DNA. Translation: AAA25759.1.
D00528 Genomic DNA. Translation: BAA00414.1.
PIRiJX0079. PXPSEP.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J05406 Genomic DNA. Translation: AAA25759.1.
D00528 Genomic DNA. Translation: BAA00414.1.
PIRiJX0079. PXPSEP.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1GPXNMR-A2-107[»]
1OQQX-ray1.47A/B2-107[»]
1OQRX-ray1.65A/B/C2-107[»]
1PDXNMR-A2-107[»]
1PUTNMR-A2-107[»]
1R7SX-ray1.91A/B/C2-107[»]
1XLNX-ray2.03A/B2-107[»]
1XLOX-ray1.84A/B2-107[»]
1XLPX-ray2.00A/B/C2-107[»]
1XLQX-ray1.45A/B/C2-107[»]
1YJINMR-A2-107[»]
1YJJNMR-A2-107[»]
2M56NMR-B2-107[»]
3LB8X-ray2.60C/D2-107[»]
3W9CX-ray2.50B2-107[»]
4JWSX-ray2.15C/D2-107[»]
4JWUX-ray2.20C/D1-107[»]
4JX1X-ray2.09C/D/G/H1-107[»]
ProteinModelPortaliP00259.
SMRiP00259.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-29810N.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Enzyme and pathway databases

BioCyciMetaCyc:MONOMER-3502.

Miscellaneous databases

EvolutionaryTraceiP00259.

Family and domain databases

CDDicd00207. fer2. 1 hit.
Gene3Di3.10.20.30. 1 hit.
InterProiIPR001041. 2Fe-2S_ferredoxin-type.
IPR001055. Adrenodoxin.
IPR018298. Adrenodoxin_Fe-S_BS.
IPR012675. Beta-grasp_dom.
[Graphical view]
PfamiPF00111. Fer2. 1 hit.
[Graphical view]
PRINTSiPR00355. ADRENODOXIN.
SUPFAMiSSF54292. SSF54292. 1 hit.
PROSITEiPS51085. 2FE2S_FER_2. 1 hit.
PS00814. ADX. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPUTX_PSEPU
AccessioniPrimary (citable) accession number: P00259
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: January 23, 2007
Last modified: November 2, 2016
This is version 116 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Direct protein sequencing

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.