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Protein
Submitted name:

Retinoic acid X receptor

Gene
N/A
Organism
Tripedalia cystophora (Jellyfish)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi103 – 178Nuclear receptorPROSITE-ProRule annotationAdd BLAST76

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation, ReceptorUniRule annotationImported
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Retinoic acid X receptorImported
OrganismiTripedalia cystophora (Jellyfish)Imported
Taxonomic identifieri6141 [NCBI]
Taxonomic lineageiEukaryotaMetazoaCnidariaCubozoaCarybdeidaTripedaliidaeTripedalia

Subcellular locationi

  • Nucleus PROSITE-ProRule annotationSAAS annotation

GO - Cellular componenti

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliO96562.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini103 – 178Nuclear receptor DNA-bindingInterPro annotationAdd BLAST76

Sequence similaritiesi

Belongs to the nuclear hormone receptor family.UniRule annotationSAAS annotation

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Family and domain databases

Gene3Di3.30.50.10. 1 hit.
InterProiView protein in InterPro
IPR000536. Nucl_hrmn_rcpt_lig-bd.
IPR001723. Nuclear_hrmn_rcpt.
IPR000003. Retinoid-X_rcpt/HNF4.
IPR001628. Znf_hrmn_rcpt.
IPR013088. Znf_NHR/GATA.
PfamiView protein in Pfam
PF00104. Hormone_recep. 1 hit.
PF00105. zf-C4. 1 hit.
PRINTSiPR00545. RETINOIDXR.
PR00398. STRDHORMONER.
PR00047. STROIDFINGER.
SMARTiView protein in SMART
SM00430. HOLI. 1 hit.
SM00399. ZnF_C4. 1 hit.
SUPFAMiSSF48508. SSF48508. 1 hit.
PROSITEiView protein in PROSITE
PS00031. NUCLEAR_REC_DBD_1. 1 hit.
PS51030. NUCLEAR_REC_DBD_2. 1 hit.

Sequencei

Sequence statusi: Complete.

O96562-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAVQCNSSTA NDVVSKEVSE ETKLQIVKEE ETSAPSCDSS VSAMSKEGGL
60 70 80 90 100
AMVDSCLKEA SPLESIHPYS PLASDASGSS TSPIASSSLL QLPSLTADSQ
110 120 130 140 150
RPVQPCSVCS DKAYVKHYGV FACEGCKGFF KRSVRNNRKY SCLGKRHCDT
160 170 180 190 200
DKKSRNRCQY CRFQKCVQVG MKPEAVQDET LKKERKDYRK RLPSTPKGSP
210 220 230 240 250
AEVTSSKVDL PMIPIESIIA AETLVDPGIQ TFASANTDPI RHVCLAADKQ
260 270 280 290 300
LASLAEWAKR LPHFRDLSIA DQVVLLQWSW PELLIGGFCH RSCAVKDGIL
310 320 330 340 350
LSTGLHLTRD NLKKAGVGAI IDKIFSEVIE KMQEIQMDRA EWGCLRAIML
360 370 380 390 400
FSPDAKGLTA IDQVENYREL YTSTLEDHVK RKHPEQPDRF TKVILRIPAL
410 420 430
KSIGLQALEH LYFFKLIGDV PMDTFLLDML EVDRS
Length:435
Mass (Da):48,275
Last modified:May 1, 1999 - v1
Checksum:iCE6E3DDA004F0492
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF091121 mRNA. Translation: AAC80008.1.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiO96562_TRICY
AccessioniPrimary (citable) accession number: O96562
Entry historyiIntegrated into UniProtKB/TrEMBL: May 1, 1999
Last sequence update: May 1, 1999
Last modified: May 10, 2017
This is version 105 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)