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Protein

Uncharacterized protein C6orf47

Gene

C6orf47

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein C6orf47
Alternative name(s):
Protein G4
Gene namesi
Name:C6orf47
Synonyms:G4
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componentsi: Chromosome 6, Unplaced

Organism-specific databases

HGNCiHGNC:19076. C6orf47.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA38785.

Polymorphism and mutation databases

BioMutaiC6orf47.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 294294Uncharacterized protein C6orf47PRO_0000089504Add
BLAST

Proteomic databases

MaxQBiO95873.
PaxDbiO95873.
PRIDEiO95873.

PTM databases

PhosphoSiteiO95873.

Expressioni

Gene expression databases

BgeeiO95873.
CleanExiHS_C6orf47.
GenevisibleiO95873. HS.

Organism-specific databases

HPAiHPA045281.
HPA053373.

Interactioni

Protein-protein interaction databases

BioGridi121786. 3 interactions.
IntActiO95873. 1 interaction.

Structurei

3D structure databases

ProteinModelPortaliO95873.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiNOG71851.
GeneTreeiENSGT00390000009270.
HOVERGENiHBG053330.
InParanoidiO95873.
OrthoDBiEOG7P02K8.
PhylomeDBiO95873.
TreeFamiTF339331.

Family and domain databases

InterProiIPR029073. DUF4661.
[Graphical view]
PANTHERiPTHR14307. PTHR14307. 1 hit.
PfamiPF15576. DUF4661. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O95873-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFLRRLGGWL PRPWGRRKPM RPDPPYPEPR RVDSSSENSG SDWDSAPETM
60 70 80 90 100
EDVGHPKTKD SGALRVSGAA SEPSKEEPQV EQLGSKRMDS LKWDQPISST
110 120 130 140 150
QESGRLEAGG ASPKLRWDHV DSGGTRRPGV SPEGGLSVPG PGAPLEKPGR
160 170 180 190 200
REKLLGWLRG EPGAPSRYLG GPEECLQIST NLTLHLLELL ASALLALCSR
210 220 230 240 250
PLRAALDTLG LRGPLGLWLH GLLSFLAALH GLHAVLSLLT AHPLHFACLF
260 270 280 290
GLLQALVLAV SLREPNGDEA ATDWESEGLE REGEEQRGDP GKGL
Length:294
Mass (Da):31,710
Last modified:January 11, 2011 - v2
Checksum:i59ACE578FB60284D
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti68 – 681G → R.5 Publications
Corresponds to variant rs3130617 [ dbSNP | Ensembl ].
VAR_022911
Natural varianti92 – 921K → N.
Corresponds to variant rs2242655 [ dbSNP | Ensembl ].
VAR_056797

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF129756 Genomic DNA. Translation: AAD18083.1.
BA000025 Genomic DNA. Translation: BAB63388.1.
AL662801, AL662899 Genomic DNA. Translation: CAI18277.1.
AL662899, AL662801 Genomic DNA. Translation: CAI18383.1.
AL670886 Genomic DNA. Translation: CAI17791.1.
AL805934 Genomic DNA. Translation: CAI18514.1.
BX511262 Genomic DNA. Translation: CAM45817.1.
CR753842 Genomic DNA. Translation: CAQ06564.1.
CR354443 Genomic DNA. Translation: CAQ06994.1.
CR759761 Genomic DNA. Translation: CAQ10871.1.
CH471081 Genomic DNA. Translation: EAX03465.1.
BC012950 mRNA. Translation: AAH12950.1.
CCDSiCCDS34399.1.
RefSeqiNP_067007.3. NM_021184.3.
UniGeneiHs.247323.

Genome annotation databases

EnsembliENST00000366431; ENSP00000375392; ENSG00000235360.
ENST00000366432; ENSP00000375400; ENSG00000203623.
ENST00000375911; ENSP00000365076; ENSG00000204439.
ENST00000413113; ENSP00000395128; ENSG00000226103.
ENST00000418357; ENSP00000398221; ENSG00000226531.
ENST00000431256; ENSP00000406870; ENSG00000228435.
ENST00000442972; ENSP00000407188; ENSG00000228177.
GeneIDi57827.
KEGGihsa:57827.
UCSCiuc003nvm.1. human.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF129756 Genomic DNA. Translation: AAD18083.1.
BA000025 Genomic DNA. Translation: BAB63388.1.
AL662801, AL662899 Genomic DNA. Translation: CAI18277.1.
AL662899, AL662801 Genomic DNA. Translation: CAI18383.1.
AL670886 Genomic DNA. Translation: CAI17791.1.
AL805934 Genomic DNA. Translation: CAI18514.1.
BX511262 Genomic DNA. Translation: CAM45817.1.
CR753842 Genomic DNA. Translation: CAQ06564.1.
CR354443 Genomic DNA. Translation: CAQ06994.1.
CR759761 Genomic DNA. Translation: CAQ10871.1.
CH471081 Genomic DNA. Translation: EAX03465.1.
BC012950 mRNA. Translation: AAH12950.1.
CCDSiCCDS34399.1.
RefSeqiNP_067007.3. NM_021184.3.
UniGeneiHs.247323.

3D structure databases

ProteinModelPortaliO95873.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi121786. 3 interactions.
IntActiO95873. 1 interaction.

PTM databases

PhosphoSiteiO95873.

Polymorphism and mutation databases

BioMutaiC6orf47.

Proteomic databases

MaxQBiO95873.
PaxDbiO95873.
PRIDEiO95873.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000366431; ENSP00000375392; ENSG00000235360.
ENST00000366432; ENSP00000375400; ENSG00000203623.
ENST00000375911; ENSP00000365076; ENSG00000204439.
ENST00000413113; ENSP00000395128; ENSG00000226103.
ENST00000418357; ENSP00000398221; ENSG00000226531.
ENST00000431256; ENSP00000406870; ENSG00000228435.
ENST00000442972; ENSP00000407188; ENSG00000228177.
GeneIDi57827.
KEGGihsa:57827.
UCSCiuc003nvm.1. human.

Organism-specific databases

CTDi57827.
GeneCardsiGC06M031685.
GC06Mj31613.
GC06Mk31608.
GC06Ml31666.
GC06Mm31702.
GC06Mn31616.
GC06Mo31616.
H-InvDBHIX0078436.
HIX0166388.
HIX0166905.
HIX0167163.
HIX0167401.
HIX0184189.
HGNCiHGNC:19076. C6orf47.
HPAiHPA045281.
HPA053373.
neXtProtiNX_O95873.
PharmGKBiPA38785.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG71851.
GeneTreeiENSGT00390000009270.
HOVERGENiHBG053330.
InParanoidiO95873.
OrthoDBiEOG7P02K8.
PhylomeDBiO95873.
TreeFamiTF339331.

Miscellaneous databases

ChiTaRSiC6orf47. human.
GenomeRNAii57827.
NextBioi64811.
PROiO95873.

Gene expression databases

BgeeiO95873.
CleanExiHS_C6orf47.
GenevisibleiO95873. HS.

Family and domain databases

InterProiIPR029073. DUF4661.
[Graphical view]
PANTHERiPTHR14307. PTHR14307. 1 hit.
PfamiPF15576. DUF4661. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Analysis of the gene-dense major histocompatibility complex class III region and its comparison to mouse."
    Xie T., Rowen L., Aguado B., Ahearn M.E., Madan A., Qin S., Campbell R.D., Hood L.
    Genome Res. 13:2621-2636(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], VARIANT ARG-68.
  2. "Homo sapiens 2,229,817bp genomic DNA of 6p21.3 HLA class I region."
    Shiina S., Tamiya G., Oka A., Inoko H.
    Submitted (SEP-1999) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], VARIANT ARG-68.
  3. "The DNA sequence and analysis of human chromosome 6."
    Mungall A.J., Palmer S.A., Sims S.K., Edwards C.A., Ashurst J.L., Wilming L., Jones M.C., Horton R., Hunt S.E., Scott C.E., Gilbert J.G.R., Clamp M.E., Bethel G., Milne S., Ainscough R., Almeida J.P., Ambrose K.D., Andrews T.D.
    , Ashwell R.I.S., Babbage A.K., Bagguley C.L., Bailey J., Banerjee R., Barker D.J., Barlow K.F., Bates K., Beare D.M., Beasley H., Beasley O., Bird C.P., Blakey S.E., Bray-Allen S., Brook J., Brown A.J., Brown J.Y., Burford D.C., Burrill W., Burton J., Carder C., Carter N.P., Chapman J.C., Clark S.Y., Clark G., Clee C.M., Clegg S., Cobley V., Collier R.E., Collins J.E., Colman L.K., Corby N.R., Coville G.J., Culley K.M., Dhami P., Davies J., Dunn M., Earthrowl M.E., Ellington A.E., Evans K.A., Faulkner L., Francis M.D., Frankish A., Frankland J., French L., Garner P., Garnett J., Ghori M.J., Gilby L.M., Gillson C.J., Glithero R.J., Grafham D.V., Grant M., Gribble S., Griffiths C., Griffiths M.N.D., Hall R., Halls K.S., Hammond S., Harley J.L., Hart E.A., Heath P.D., Heathcott R., Holmes S.J., Howden P.J., Howe K.L., Howell G.R., Huckle E., Humphray S.J., Humphries M.D., Hunt A.R., Johnson C.M., Joy A.A., Kay M., Keenan S.J., Kimberley A.M., King A., Laird G.K., Langford C., Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C.R., Lloyd D.M., Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M., Maslen G.L., Matthews L., McCann O.T., McLaren S.J., McLay K., McMurray A., Moore M.J.F., Mullikin J.C., Niblett D., Nickerson T., Novik K.L., Oliver K., Overton-Larty E.K., Parker A., Patel R., Pearce A.V., Peck A.I., Phillimore B.J.C.T., Phillips S., Plumb R.W., Porter K.M., Ramsey Y., Ranby S.A., Rice C.M., Ross M.T., Searle S.M., Sehra H.K., Sheridan E., Skuce C.D., Smith S., Smith M., Spraggon L., Squares S.L., Steward C.A., Sycamore N., Tamlyn-Hall G., Tester J., Theaker A.J., Thomas D.W., Thorpe A., Tracey A., Tromans A., Tubby B., Wall M., Wallis J.M., West A.P., White S.S., Whitehead S.L., Whittaker H., Wild A., Willey D.J., Wilmer T.E., Wood J.M., Wray P.W., Wyatt J.C., Young L., Younger R.M., Bentley D.R., Coulson A., Durbin R.M., Hubbard T., Sulston J.E., Dunham I., Rogers J., Beck S.
    Nature 425:805-811(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], VARIANT ARG-68.
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], VARIANT ARG-68.
  5. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT ARG-68.
    Tissue: Eye.

Entry informationi

Entry nameiCF047_HUMAN
AccessioniPrimary (citable) accession number: O95873
Secondary accession number(s): B0UXA1
, B0UZ50, Q5SSS6, Q95IG0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2005
Last sequence update: January 11, 2011
Last modified: June 24, 2015
This is version 106 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 6
    Human chromosome 6: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.