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O95873

- CF047_HUMAN

UniProt

O95873 - CF047_HUMAN

Protein

Uncharacterized protein C6orf47

Gene

C6orf47

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 101 (01 Oct 2014)
      Sequence version 2 (11 Jan 2011)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Uncharacterized protein C6orf47
    Alternative name(s):
    Protein G4
    Gene namesi
    Name:C6orf47
    Synonyms:G4
    OrganismiHomo sapiens (Human)
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
    ProteomesiUP000005640: Chromosome 6

    Organism-specific databases

    HGNCiHGNC:19076. C6orf47.

    Subcellular locationi

    GO - Cellular componenti

    1. cytoplasm Source: HPA

    Pathology & Biotechi

    Organism-specific databases

    PharmGKBiPA38785.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 294294Uncharacterized protein C6orf47PRO_0000089504Add
    BLAST

    Proteomic databases

    MaxQBiO95873.
    PaxDbiO95873.
    PRIDEiO95873.

    PTM databases

    PhosphoSiteiO95873.

    Expressioni

    Gene expression databases

    BgeeiO95873.
    CleanExiHS_C6orf47.
    GenevestigatoriO95873.

    Organism-specific databases

    HPAiHPA045281.
    HPA053373.

    Interactioni

    Protein-protein interaction databases

    BioGridi121786. 3 interactions.
    IntActiO95873. 1 interaction.
    STRINGi9606.ENSP00000407188.

    Structurei

    3D structure databases

    ProteinModelPortaliO95873.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiNOG71851.
    HOVERGENiHBG053330.
    InParanoidiO95873.
    OMAiAPIVINT.
    OrthoDBiEOG7P02K8.
    PhylomeDBiO95873.
    TreeFamiTF339331.

    Family and domain databases

    InterProiIPR029073. DUF4661.
    [Graphical view]
    PANTHERiPTHR14307. PTHR14307. 1 hit.
    PfamiPF15576. DUF4661. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    O95873-1 [UniParc]FASTAAdd to Basket

    « Hide

    MFLRRLGGWL PRPWGRRKPM RPDPPYPEPR RVDSSSENSG SDWDSAPETM    50
    EDVGHPKTKD SGALRVSGAA SEPSKEEPQV EQLGSKRMDS LKWDQPISST 100
    QESGRLEAGG ASPKLRWDHV DSGGTRRPGV SPEGGLSVPG PGAPLEKPGR 150
    REKLLGWLRG EPGAPSRYLG GPEECLQIST NLTLHLLELL ASALLALCSR 200
    PLRAALDTLG LRGPLGLWLH GLLSFLAALH GLHAVLSLLT AHPLHFACLF 250
    GLLQALVLAV SLREPNGDEA ATDWESEGLE REGEEQRGDP GKGL 294
    Length:294
    Mass (Da):31,710
    Last modified:January 11, 2011 - v2
    Checksum:i59ACE578FB60284D
    GO

    Natural variant

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Natural varianti68 – 681G → R.5 Publications
    Corresponds to variant rs3130617 [ dbSNP | Ensembl ].
    VAR_022911
    Natural varianti92 – 921K → N.
    Corresponds to variant rs2242655 [ dbSNP | Ensembl ].
    VAR_056797

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF129756 Genomic DNA. Translation: AAD18083.1.
    BA000025 Genomic DNA. Translation: BAB63388.1.
    AL662801, AL662899 Genomic DNA. Translation: CAI18277.1.
    AL662899, AL662801 Genomic DNA. Translation: CAI18383.1.
    AL670886 Genomic DNA. Translation: CAI17791.1.
    AL805934 Genomic DNA. Translation: CAI18514.1.
    BX511262 Genomic DNA. Translation: CAM45817.1.
    CR753842 Genomic DNA. Translation: CAQ06564.1.
    CR354443 Genomic DNA. Translation: CAQ06994.1.
    CR759761 Genomic DNA. Translation: CAQ10871.1.
    CH471081 Genomic DNA. Translation: EAX03465.1.
    BC012950 mRNA. Translation: AAH12950.1.
    CCDSiCCDS34399.1.
    RefSeqiNP_067007.3. NM_021184.3.
    UniGeneiHs.247323.

    Genome annotation databases

    EnsembliENST00000366431; ENSP00000375392; ENSG00000235360.
    ENST00000366432; ENSP00000375400; ENSG00000203623.
    ENST00000375911; ENSP00000365076; ENSG00000204439.
    ENST00000413113; ENSP00000395128; ENSG00000226103.
    ENST00000418357; ENSP00000398221; ENSG00000226531.
    ENST00000431256; ENSP00000406870; ENSG00000228435.
    ENST00000442972; ENSP00000407188; ENSG00000228177.
    GeneIDi57827.
    KEGGihsa:57827.
    UCSCiuc003nvm.1. human.

    Keywords - Coding sequence diversityi

    Polymorphism

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF129756 Genomic DNA. Translation: AAD18083.1 .
    BA000025 Genomic DNA. Translation: BAB63388.1 .
    AL662801 , AL662899 Genomic DNA. Translation: CAI18277.1 .
    AL662899 , AL662801 Genomic DNA. Translation: CAI18383.1 .
    AL670886 Genomic DNA. Translation: CAI17791.1 .
    AL805934 Genomic DNA. Translation: CAI18514.1 .
    BX511262 Genomic DNA. Translation: CAM45817.1 .
    CR753842 Genomic DNA. Translation: CAQ06564.1 .
    CR354443 Genomic DNA. Translation: CAQ06994.1 .
    CR759761 Genomic DNA. Translation: CAQ10871.1 .
    CH471081 Genomic DNA. Translation: EAX03465.1 .
    BC012950 mRNA. Translation: AAH12950.1 .
    CCDSi CCDS34399.1.
    RefSeqi NP_067007.3. NM_021184.3.
    UniGenei Hs.247323.

    3D structure databases

    ProteinModelPortali O95873.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 121786. 3 interactions.
    IntActi O95873. 1 interaction.
    STRINGi 9606.ENSP00000407188.

    PTM databases

    PhosphoSitei O95873.

    Proteomic databases

    MaxQBi O95873.
    PaxDbi O95873.
    PRIDEi O95873.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENST00000366431 ; ENSP00000375392 ; ENSG00000235360 .
    ENST00000366432 ; ENSP00000375400 ; ENSG00000203623 .
    ENST00000375911 ; ENSP00000365076 ; ENSG00000204439 .
    ENST00000413113 ; ENSP00000395128 ; ENSG00000226103 .
    ENST00000418357 ; ENSP00000398221 ; ENSG00000226531 .
    ENST00000431256 ; ENSP00000406870 ; ENSG00000228435 .
    ENST00000442972 ; ENSP00000407188 ; ENSG00000228177 .
    GeneIDi 57827.
    KEGGi hsa:57827.
    UCSCi uc003nvm.1. human.

    Organism-specific databases

    CTDi 57827.
    GeneCardsi GC06M031650.
    GC06Mj31613.
    GC06Mk31608.
    GC06Ml31666.
    GC06Mm31702.
    GC06Mn31616.
    GC06Mo31616.
    H-InvDB HIX0078436.
    HIX0166388.
    HIX0166905.
    HIX0167163.
    HIX0167401.
    HIX0184189.
    HGNCi HGNC:19076. C6orf47.
    HPAi HPA045281.
    HPA053373.
    neXtProti NX_O95873.
    PharmGKBi PA38785.
    GenAtlasi Search...

    Phylogenomic databases

    eggNOGi NOG71851.
    HOVERGENi HBG053330.
    InParanoidi O95873.
    OMAi APIVINT.
    OrthoDBi EOG7P02K8.
    PhylomeDBi O95873.
    TreeFami TF339331.

    Miscellaneous databases

    ChiTaRSi C6orf47. human.
    GenomeRNAii 57827.
    NextBioi 64811.

    Gene expression databases

    Bgeei O95873.
    CleanExi HS_C6orf47.
    Genevestigatori O95873.

    Family and domain databases

    InterProi IPR029073. DUF4661.
    [Graphical view ]
    PANTHERi PTHR14307. PTHR14307. 1 hit.
    Pfami PF15576. DUF4661. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Analysis of the gene-dense major histocompatibility complex class III region and its comparison to mouse."
      Xie T., Rowen L., Aguado B., Ahearn M.E., Madan A., Qin S., Campbell R.D., Hood L.
      Genome Res. 13:2621-2636(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], VARIANT ARG-68.
    2. "Homo sapiens 2,229,817bp genomic DNA of 6p21.3 HLA class I region."
      Shiina S., Tamiya G., Oka A., Inoko H.
      Submitted (SEP-1999) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], VARIANT ARG-68.
    3. "The DNA sequence and analysis of human chromosome 6."
      Mungall A.J., Palmer S.A., Sims S.K., Edwards C.A., Ashurst J.L., Wilming L., Jones M.C., Horton R., Hunt S.E., Scott C.E., Gilbert J.G.R., Clamp M.E., Bethel G., Milne S., Ainscough R., Almeida J.P., Ambrose K.D., Andrews T.D.
      , Ashwell R.I.S., Babbage A.K., Bagguley C.L., Bailey J., Banerjee R., Barker D.J., Barlow K.F., Bates K., Beare D.M., Beasley H., Beasley O., Bird C.P., Blakey S.E., Bray-Allen S., Brook J., Brown A.J., Brown J.Y., Burford D.C., Burrill W., Burton J., Carder C., Carter N.P., Chapman J.C., Clark S.Y., Clark G., Clee C.M., Clegg S., Cobley V., Collier R.E., Collins J.E., Colman L.K., Corby N.R., Coville G.J., Culley K.M., Dhami P., Davies J., Dunn M., Earthrowl M.E., Ellington A.E., Evans K.A., Faulkner L., Francis M.D., Frankish A., Frankland J., French L., Garner P., Garnett J., Ghori M.J., Gilby L.M., Gillson C.J., Glithero R.J., Grafham D.V., Grant M., Gribble S., Griffiths C., Griffiths M.N.D., Hall R., Halls K.S., Hammond S., Harley J.L., Hart E.A., Heath P.D., Heathcott R., Holmes S.J., Howden P.J., Howe K.L., Howell G.R., Huckle E., Humphray S.J., Humphries M.D., Hunt A.R., Johnson C.M., Joy A.A., Kay M., Keenan S.J., Kimberley A.M., King A., Laird G.K., Langford C., Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C.R., Lloyd D.M., Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M., Maslen G.L., Matthews L., McCann O.T., McLaren S.J., McLay K., McMurray A., Moore M.J.F., Mullikin J.C., Niblett D., Nickerson T., Novik K.L., Oliver K., Overton-Larty E.K., Parker A., Patel R., Pearce A.V., Peck A.I., Phillimore B.J.C.T., Phillips S., Plumb R.W., Porter K.M., Ramsey Y., Ranby S.A., Rice C.M., Ross M.T., Searle S.M., Sehra H.K., Sheridan E., Skuce C.D., Smith S., Smith M., Spraggon L., Squares S.L., Steward C.A., Sycamore N., Tamlyn-Hall G., Tester J., Theaker A.J., Thomas D.W., Thorpe A., Tracey A., Tromans A., Tubby B., Wall M., Wallis J.M., West A.P., White S.S., Whitehead S.L., Whittaker H., Wild A., Willey D.J., Wilmer T.E., Wood J.M., Wray P.W., Wyatt J.C., Young L., Younger R.M., Bentley D.R., Coulson A., Durbin R.M., Hubbard T., Sulston J.E., Dunham I., Rogers J., Beck S.
      Nature 425:805-811(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], VARIANT ARG-68.
    4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], VARIANT ARG-68.
    5. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT ARG-68.
      Tissue: Eye.

    Entry informationi

    Entry nameiCF047_HUMAN
    AccessioniPrimary (citable) accession number: O95873
    Secondary accession number(s): B0UXA1
    , B0UZ50, Q5SSS6, Q95IG0
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 19, 2005
    Last sequence update: January 11, 2011
    Last modified: October 1, 2014
    This is version 101 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Human chromosome 6
      Human chromosome 6: entries, gene names and cross-references to MIM
    2. Human entries with polymorphisms or disease mutations
      List of human entries with polymorphisms or disease mutations
    3. Human polymorphisms and disease mutations
      Index of human polymorphisms and disease mutations

    External Data

    Dasty 3