O95428 (PPN_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 29, 2013.
Version 95.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Papilin | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1278 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at transcript level |
General annotation (Comments)
| Subcellular location | Secreted Potential. |
| Sequence similarities | Belongs to the papilin family. Contains 1 BPTI/Kunitz inhibitor domain. Contains 3 Ig-like C2-type (immunoglobulin-like) domains. Contains 1 PLAC domain. Contains 5 TSP type-1 domains. |
| Sequence caution | The sequence AAC97963.1 differs from that shown. Reason: Erroneous gene model prediction. The sequence BAC86235.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence BAG57189.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. The sequence BAG57189.1 differs from that shown. Reason: Erroneous termination at position 1216. Translated as Glu. The sequence BAG57757.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. The sequence CAH56406.1 differs from that shown. Reason: Partially unspliced mRNA. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Secreted |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Immunoglobulin domain Repeat Signal |
| Molecular function | Protease inhibitor Serine protease inhibitor |
| PTM | Disulfide bond |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Cellular_component | basement membrane Inferred from electronic annotation. Source: Compara |
| Molecular_function | metalloendopeptidase activity Inferred from electronic annotation. Source: InterPro serine-type endopeptidase inhibitor activityInferred from electronic annotation. Source: UniProtKB-KW zinc ion bindingInferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Alternative products
| This entry describes 6 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: O95428-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: O95428-2) The sequence of this isoform differs from the canonical sequence as follows: 1-801: Missing. 802-907: SSCQGSLHGP...PAPPFHSSSY → MGPVVPSLGL...PPTDLTSHLS | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 5 (identifier: O95428-5) The sequence of this isoform differs from the canonical sequence as follows: 749-764: Missing. | ||||||
| Isoform 6 (identifier: O95428-6) The sequence of this isoform differs from the canonical sequence as follows: 197-223: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 3 (identifier: O95428-3) The sequence of this isoform differs from the canonical sequence as follows: 124-129: GENFYY → VLGLQA 130-1278: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 4 (identifier: O95428-4) The sequence of this isoform differs from the canonical sequence as follows: 1088-1109: RHQLQPDGSLVISRVAVEDGGF → STHRPAQGPWQGLRRPARAGQL 1110-1278: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||
Molecule processing | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 18 | 18 | Potential | ||||||||
| Chain | 19 – 1278 | 1260 | Papilin | PRO_0000324550 | |||||||
Regions | |||||||||||
| Domain | 26 – 80 | 55 | TSP type-1 1 | ||||||||
| Domain | 304 – 361 | 58 | TSP type-1 2 | ||||||||
| Domain | 362 – 421 | 60 | TSP type-1 3 | ||||||||
| Domain | 423 – 481 | 59 | TSP type-1 4 | ||||||||
| Domain | 484 – 539 | 56 | TSP type-1 5 | ||||||||
| Domain | 754 – 804 | 51 | BPTI/Kunitz inhibitor | ||||||||
| Domain | 900 – 995 | 96 | Ig-like C2-type 1 | ||||||||
| Domain | 1033 – 1128 | 96 | Ig-like C2-type 2 | ||||||||
| Domain | 1133 – 1218 | 86 | Ig-like C2-type 3 | ||||||||
| Domain | 1231 – 1270 | 40 | PLAC | ||||||||
Amino acid modifications | |||||||||||
| Disulfide bond | 38 ↔ 74 | By similarity | |||||||||
| Disulfide bond | 42 ↔ 79 | By similarity | |||||||||
| Disulfide bond | 53 ↔ 64 | By similarity | |||||||||
| Disulfide bond | 316 ↔ 355 | By similarity | |||||||||
| Disulfide bond | 320 ↔ 360 | By similarity | |||||||||
| Disulfide bond | 331 ↔ 343 | By similarity | |||||||||
| Disulfide bond | 754 ↔ 804 | By similarity | |||||||||
| Disulfide bond | 763 ↔ 787 | By similarity | |||||||||
| Disulfide bond | 779 ↔ 800 | By similarity | |||||||||
| Disulfide bond | 931 ↔ 978 | By similarity | |||||||||
| Disulfide bond | 1065 ↔ 1112 | By similarity | |||||||||
| Disulfide bond | 1154 ↔ 1202 | By similarity | |||||||||
Natural variations | |||||||||||
| Alternative sequence | 1 – 801 | 801 | Missing in isoform 2. | VSP_032269 | |||||||
| Alternative sequence | 124 – 129 | 6 | GENFYY → VLGLQA in isoform 3. | VSP_032270 | |||||||
| Alternative sequence | 130 – 1278 | 1149 | Missing in isoform 3. | VSP_032271 | |||||||
| Alternative sequence | 197 – 223 | 27 | Missing in isoform 6. | VSP_037595 | |||||||
| Alternative sequence | 749 – 764 | 16 | Missing in isoform 5. | VSP_037596 | |||||||
| Alternative sequence | 802 – 907 | 106 | SSCQG…HSSSY → MGPVVPSLGLLEGAPTRMVA AAVLQASRNPASTGQGPRCR ESPGLLVVSGGKTNSLGQGR PPTPRPLENGHGGRSLGPGP LDWVEMPDHQRHPSTAPPTD LTSHLS in isoform 2. | VSP_032272 | |||||||
| Alternative sequence | 1088 – 1109 | 22 | RHQLQ…EDGGF → STHRPAQGPWQGLRRPARAG QL in isoform 4. | VSP_032273 | |||||||
| Alternative sequence | 1110 – 1278 | 169 | Missing in isoform 4. | VSP_032274 | |||||||
| Natural variant | 33 | 1 | S → G. Corresponds to variant rs2280792 [ dbSNP | Ensembl ]. | VAR_039815 | |||||||
| Natural variant | 191 | 1 | A → T. Corresponds to variant rs741842 [ dbSNP | Ensembl ]. | VAR_039816 | |||||||
| Natural variant | 356 | 1 | N → H. Corresponds to variant rs17126331 [ dbSNP | Ensembl ]. | VAR_039817 | |||||||
| Natural variant | 443 | 1 | V → I. Corresponds to variant rs17126352 [ dbSNP | Ensembl ]. | VAR_039818 | |||||||
| Natural variant | 461 | 1 | A → V. Corresponds to variant rs17126354 [ dbSNP | Ensembl ]. | VAR_039819 | |||||||
| Natural variant | 628 | 1 | H → R. Corresponds to variant rs17182244 [ dbSNP | Ensembl ]. | VAR_039820 | |||||||
| Natural variant | 723 | 1 | Q → H. Corresponds to variant rs2242616 [ dbSNP | Ensembl ]. | VAR_039821 | |||||||
| Natural variant | 896 | 1 | G → R. Ref.3 Corresponds to variant rs177386 [ dbSNP | Ensembl ]. | VAR_039822 | |||||||
| Natural variant | 1192 | 1 | L → V. Corresponds to variant rs2107731 [ dbSNP | Ensembl ]. | VAR_039823 | |||||||
| Natural variant | 1201 | 1 | T → M. Ref.1 Corresponds to variant rs4903104 [ dbSNP | Ensembl ]. | VAR_039824 | |||||||
| Natural variant | 1260 | 1 | S → T. Corresponds to variant rs11626824 [ dbSNP | Ensembl ]. | VAR_039825 | |||||||
Experimental info | |||||||||||
| Sequence conflict | 326 | 1 | S → P in BAG57757. Ref.2 | ||||||||
| Sequence conflict | 693 | 1 | M → R in BAG57757. Ref.2 | ||||||||
| Sequence conflict | 693 | 1 | M → R in CAD97826. Ref.5 | ||||||||
| Sequence conflict | 693 | 1 | M → R in BAC85123. Ref.6 | ||||||||
| Sequence conflict | 1162 | 1 | N → D in BAG57189. Ref.2 | ||||||||
| Sequence conflict | 1229 | 1 | R → K in CAD97826. Ref.5 | ||||||||
Sequences
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References
| [1] | "The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment." Clark H.F., Gurney A.L., Abaya E., Baker K., Baldwin D.T., Brush J., Chen J., Chow B., Chui C., Crowley C., Currell B., Deuel B., Dowd P., Eaton D., Foster J.S., Grimaldi C., Gu Q., Hass P.E. Gray A.M.Genome Res. 13:2265-2270(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), VARIANT MET-1201. |
| [2] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 5), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 800-1217 (ISOFORM 4). Tissue: Amygdala, Cerebellum and Synovial cell. |
| [3] | "The DNA sequence and analysis of human chromosome 14." Heilig R., Eckenberg R., Petit J.-L., Fonknechten N., Da Silva C., Cattolico L., Levy M., Barbe V., De Berardinis V., Ureta-Vidal A., Pelletier E., Vico V., Anthouard V., Rowen L., Madan A., Qin S., Sun H., Du H. Weissenbach J.Nature 421:601-607(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], VARIANT ARG-896. |
| [4] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3). Tissue: Ovary. |
| [5] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 81-302 (ISOFORM 6), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 619-1278 (ISOFORM 1). Tissue: Liver and Testis. |
| [6] | "The nucleotide sequence of a long cDNA clone isolated from human spleen." Jikuya H., Takano J., Kikuno R., Nagase T., Ohara O. Submitted (SEP-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 620-1278 (ISOFORM 1). Tissue: Spleen. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AY358330 mRNA. Translation: AAQ88696.1. AK125658 mRNA. Translation: BAC86235.1. Different initiation. AK294560 mRNA. Translation: BAG57757.1. Different initiation. AK293773 mRNA. Translation: BAG57189.1. Sequence problems. AC004846 Genomic DNA. No translation available. AF109907 Genomic DNA. Translation: AAC97963.1. Sequence problems. BC042057 mRNA. Translation: AAH42057.1. AL110280 mRNA. Translation: CAH56406.1. Sequence problems. BX470414 mRNA. No translation available. BX537757 mRNA. Translation: CAD97826.1. AK131073 mRNA. Translation: BAC85123.1. |
| IPI | IPI00445654. IPI00795260. IPI00872077. IPI00887374. IPI00937971. IPI00938081. |
| RefSeq | NP_775733.3. NM_173462.3. |
| UniGene | Hs.509909. |
3D structure databases | |
| ProteinModelPortal | O95428. |
| ModBase | Search... |
Protein family/group databases | |
| MEROPS | I43.001. |
PTM databases | |
| PhosphoSite | O95428. |
Proteomic databases | |
| PaxDb | O95428. |
| PRIDE | O95428. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000340738; ENSP00000345395; ENSG00000100767. ENST00000381166; ENSP00000370558; ENSG00000100767. ENST00000427855; ENSP00000403403; ENSG00000100767. ENST00000554301; ENSP00000451803; ENSG00000100767. ENST00000555445; ENSP00000451729; ENSG00000100767. |
| GeneID | 89932. |
| KEGG | hsa:89932. |
| UCSC | uc001xnw.4. human. uc010arm.3. human. uc010ttx.2. human. uc010tty.2. human. |
Organism-specific databases | |
| CTD | 89932. |
| GeneCards | GC14P073704. |
| H-InvDB | HIX0019543. HIX0037927. |
| HGNC | HGNC:19262. PAPLN. |
| HPA | HPA048682. |
| neXtProt | NX_O95428. |
| PharmGKB | PA134914395. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG242665. |
| HOVERGEN | HBG108281. |
| OMA | SVNIRWS. |
| OrthoDB | EOG4V6ZGD. |
Gene expression databases | |
| ArrayExpress | O95428. |
| Bgee | O95428. |
| CleanEx | HS_PAPLN. |
| Genevestigator | O95428. |
Family and domain databases | |
| Gene3D | 2.60.40.10. 3 hits. 4.10.410.10. 1 hit. |
| InterPro | IPR010294. ADAM_spacer1. IPR007110. Ig-like_dom. IPR013783. Ig-like_fold. IPR013098. Ig_I-set. IPR003598. Ig_sub2. IPR013273. Peptidase_M12B_ADAM-TS. IPR010909. PLAC. IPR002223. Prot_inh_Kunz-m. IPR020901. Prtase_inh_Kunz-CS. IPR000884. Thrombospondin_1_rpt. [Graphical view] |
| Pfam | PF05986. ADAM_spacer1. 1 hit. PF07679. I-set. 3 hits. PF00014. Kunitz_BPTI. 1 hit. PF08686. PLAC. 1 hit. PF00090. TSP_1. 5 hits. [Graphical view] |
| PRINTS | PR01857. ADAMTSFAMILY. PR00759. BASICPTASE. |
| SMART | SM00408. IGc2. 3 hits. SM00131. KU. 1 hit. SM00209. TSP1. 5 hits. [Graphical view] |
| SUPFAM | SSF57362. Prot_inh_Kunz-m. 1 hit. SSF82895. TSP1. 5 hits. |
| PROSITE | PS00280. BPTI_KUNITZ_1. 1 hit. PS50279. BPTI_KUNITZ_2. 1 hit. PS50835. IG_LIKE. 3 hits. PS50900. PLAC. 1 hit. PS50092. TSP1. 5 hits. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | PAPLN. human. |
| GenomeRNAi | 89932. |
| NextBio | 76441. |
Entry information
| Entry name | PPN_HUMAN | ||||||||
| Accession | Primary (citable) accession number: O95428 Secondary accession number(s): B4DES8 Q8IVU0 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 14 Human chromosome 14: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| SIMILARITY comments Index of protein domains and families |

Clusters with
