O95347 (SMC2_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 29, 2013.
Version 112.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Structural maintenance of chromosomes protein 2 Short name=SMC protein 2 Short name=SMC-2 Alternative name(s): Chromosome-associated protein E Short name=hCAP-E XCAP-E homolog | ||||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||||
| Taxonomic identifier | 9606 [NCBI] | ||||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1197 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Central component of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. Ref.9 |
| Subunit structure | Forms a heterodimer with SMC4. Component of the condensin complex, which contains the SMC2 and SMC4 heterodimer, and three non SMC subunits that probably regulate the complex: BRRN1/CAPH, CNAP1/CAPD2 and CAPG. Ref.8 Ref.9 |
| Subcellular location | Nucleus. Cytoplasm. Chromosome. Note: In interphase cells, the majority of the condensin complex is found in the cytoplasm, while a minority of the complex is associated with chromatin. A subpopulation of the complex however remains associated with chromosome foci in interphase cells. During mitosis, most of the condensin complex is associated with the chromatin. At the onset of prophase, the regulatory subunits of the complex are phosphorylated by CDC2, leading to condensin's association with chromosome arms and to chromosome condensation. Dissociation from chromosomes is observed in late telophase. Ref.8 |
| Domain | The hinge domain, which separates the large intramolecular coiled coil regions, allows the heterodimerization with SMC4, forming a V-shaped heterodimer By similarity. |
| Sequence similarities | Belongs to the SMC family. SMC2 subfamily. |
| Sequence caution | The sequence AAC72360.1 differs from that shown. Reason: Frameshift at positions 890 and 908. The sequence AAF29579.1 differs from that shown. Reason: Erroneous initiation. |
Ontologies
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: O95347-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: O95347-2) The sequence of this isoform differs from the canonical sequence as follows: 1091-1099: SLVALSLIL → QKQQNHTTG 1100-1197: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1197 | 1197 | Structural maintenance of chromosomes protein 2 | PRO_0000118995 | |||||
Regions | |||||||||
| Nucleotide binding | 32 – 39 | 8 | ATP Potential | ||||||
| Region | 508 – 671 | 164 | Flexible hinge | ||||||
| Coiled coil | 173 – 507 | 335 | Potential | ||||||
| Coiled coil | 672 – 926 | 255 | Potential | ||||||
| Coiled coil | 963 – 1031 | 69 | Potential | ||||||
| Compositional bias | 1085 – 1120 | 36 | Ala/Asp-rich (DA-box) | ||||||
Amino acid modifications | |||||||||
| Modified residue | 114 | 1 | N6-acetyllysine Ref.10 | ||||||
| Modified residue | 222 | 1 | N6-acetyllysine Ref.10 | ||||||
| Modified residue | 677 | 1 | N6-acetyllysine Ref.10 | ||||||
| Modified residue | 1158 | 1 | N6-acetyllysine Ref.10 | ||||||
| Modified residue | 1160 | 1 | N6-acetyllysine Ref.10 | ||||||
Natural variations | |||||||||
| Alternative sequence | 1091 – 1099 | 9 | SLVALSLIL → QKQQNHTTG in isoform 2. | VSP_007243 | |||||
| Alternative sequence | 1100 – 1197 | 98 | Missing in isoform 2. | VSP_007244 | |||||
| Natural variant | 1009 | 1 | E → K. Corresponds to variant rs4562395 [ dbSNP | Ensembl ]. | VAR_047489 | |||||
Experimental info | |||||||||
| Sequence conflict | 294 | 1 | G → V in AAC72360. Ref.1 | ||||||
| Sequence conflict | 916 | 1 | N → H in AAC72360. Ref.1 | ||||||
| Sequence conflict | 998 | 1 | Y → C in AAC72360. Ref.1 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Identification of two distinct human SMC protein complexes involved in mitotic chromosome dynamics." Schmiesing J.A., Ball A.R. Jr., Gregson H.C., Alderton J.M., Zhou S., Yokomori K. Proc. Natl. Acad. Sci. U.S.A. 95:12906-12911(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), INTERACTION WITH SMC4. Tissue: Teratocarcinoma. |
| [2] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Lymph node. |
| [3] | "DNA sequence and analysis of human chromosome 9." Humphray S.J., Oliver K., Hunt A.R., Plumb R.W., Loveland J.E., Howe K.L., Andrews T.D., Searle S., Hunt S.E., Scott C.E., Jones M.C., Ainscough R., Almeida J.P., Ambrose K.D., Ashwell R.I.S., Babbage A.K., Babbage S., Bagguley C.L. Dunham I.Nature 429:369-374(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Brain. |
| [6] | "Functional prediction of the coding sequences of 32 new genes deduced by analysis of cDNA clones from human fetal liver." Zhang C., Yu Y., Zhang S., Ouyang S., Luo L., Wei H., Zhou G., Zhou W., Bi J., Zhang Y., Liu M., He F. Submitted (DEC-1998) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 907-1197 (ISOFORM 2). Tissue: Fetal liver. |
| [7] | "The evolution of SMC proteins: phylogenetic analysis and structural implications." Cobbe N., Heck M.M.S. Mol. Biol. Evol. 21:332-347(2004) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION. |
| [8] | "A human condensin complex containing hCAP-C-hCAP-E and CNAP1, a homolog of Xenopus XCAP-D2, colocalizes with phosphorylated histone H3 during the early stage of mitotic chromosome condensation." Schmiesing J.A., Gregson H.C., Zhou S., Yokomori K. Mol. Cell. Biol. 20:6996-7006(2000) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION IN A CONDENSIN COMPLEX WITH SMC4 AND CNAP1, SUBCELLULAR LOCATION. |
| [9] | "Chromosome condensation by a human condensin complex in Xenopus egg extracts." Kimura K., Cuvier O., Hirano T. J. Biol. Chem. 276:5417-5420(2001) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION IN A CONDENSIN COMPLEX WITH SMC4; BRRN1; CNAP1 AND CAPG, FUNCTION OF THE COMPLEX. |
| [10] | "Lysine acetylation targets protein complexes and co-regulates major cellular functions." Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T.C., Olsen J.V., Mann M. Science 325:834-840(2009) [PubMed] [Europe PMC] [Abstract] Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-114; LYS-222; LYS-677; LYS-1158 AND LYS-1160, MASS SPECTROMETRY. |
| [11] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AF092563 mRNA. Translation: AAC72360.1. Frameshift. AL833191 mRNA. Translation: CAI46187.1. AL161791, AL354938 Genomic DNA. Translation: CAI16866.1. AL354938, AL161791 Genomic DNA. Translation: CAI16923.1. CH471105 Genomic DNA. Translation: EAW58973.1. BC130385 mRNA. Translation: AAI30386.1. AF113673 mRNA. Translation: AAF29579.1. Different initiation. BN000163 mRNA. Translation: CAD89875.1. |
| IPI | IPI00007927. IPI00232806. |
| RefSeq | NP_001036015.1. NM_001042550.1. NP_001036016.1. NM_001042551.1. NP_001252531.1. NM_001265602.1. NP_006435.2. NM_006444.2. |
| UniGene | Hs.119023. |
3D structure databases | |
| ProteinModelPortal | O95347. |
| ModBase | Search... |
Protein-protein interaction databases | |
| DIP | DIP-35422N. |
| IntAct | O95347. 7 interactions. |
| MINT | MINT-1161754. |
| STRING | 9606.ENSP00000286398. |
PTM databases | |
| PhosphoSite | O95347. |
Proteomic databases | |
| PaxDb | O95347. |
| PRIDE | O95347. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000286398; ENSP00000286398; ENSG00000136824. ENST00000303219; ENSP00000306152; ENSG00000136824. ENST00000374787; ENSP00000363919; ENSG00000136824. ENST00000374793; ENSP00000363925; ENSG00000136824. ENST00000493955; ENSP00000431534; ENSG00000136824. |
| GeneID | 10592. |
| KEGG | hsa:10592. |
| UCSC | uc004bbv.3. human. |
Organism-specific databases | |
| CTD | 10592. |
| GeneCards | GC09P106856. |
| H-InvDB | HIX0008250. |
| HGNC | HGNC:14011. SMC2. |
| MIM | 605576. gene. |
| neXtProt | NX_O95347. |
| PharmGKB | PA37833. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | COG1196. |
| HOGENOM | HOG000228249. |
| HOVERGEN | HBG106605. |
| InParanoid | O95347. |
| KO | K06674. |
| OMA | CQNGKIP. |
| OrthoDB | EOG49S65K. |
Enzyme and pathway databases | |
| Pathway_Interaction_DB | aurora_b_pathway. Aurora B signaling. |
| Reactome | REACT_115566. Cell Cycle. REACT_21300. Mitotic M-M/G1 phases. |
Gene expression databases | |
| ArrayExpress | O95347. |
| Bgee | O95347. |
| CleanEx | HS_SMC2. |
| Genevestigator | O95347. |
| GermOnline | ENSG00000136824. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR027417. P-loop_NTPase. IPR003395. RecF/RecN/SMC. IPR024704. SMC. IPR027120. Smc2. IPR010935. SMC_hinge. [Graphical view] |
| PANTHER | PTHR18937:SF9. PTHR18937:SF9. 1 hit. |
| Pfam | PF06470. SMC_hinge. 1 hit. PF02463. SMC_N. 2 hits. [Graphical view] |
| PIRSF | PIRSF005719. SMC. 1 hit. |
| SMART | SM00968. SMC_hinge. 1 hit. [Graphical view] |
| SUPFAM | SSF75553. SMC_hinge. 1 hit. SSF52540. SSF52540. 1 hit. |
| ProtoNet | Search... |
Other | |
| ChiTaRS | SMC2. human. |
| GenomeRNAi | 10592. |
| NextBio | 40225. |
| SOURCE | Search... |
Entry information
| Entry name | SMC2_HUMAN | ||||||||
| Accession | Primary (citable) accession number: O95347 Secondary accession number(s): Q6IEE0, Q9P1P2 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 9 Human chromosome 9: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
