O95218 (ZRAB2_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 29, 2013.
Version 120.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Zinc finger Ran-binding domain-containing protein 2 Alternative name(s): Zinc finger protein 265 Zinc finger, splicing | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 330 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Splice factor required for alternative splicing of TRA2B/SFRS10 transcripts. May interfere with constitutive 5'-splice site selection. Ref.8 |
| Subunit structure | Interacts with the C-terminal half of SNRNP70, the Arg/Ser-rich domain of AKAP17A as well as with U2AF1 and CLK1. Ref.8 Ref.10 |
| Subcellular location | |
| Domain | The RanBP2-type zinc fingers mediate binding to RNA. |
| Post-translational modification | Isoform 2 is phosphorylated on Ser-310 upon DNA damage, probably by ATM or ATR. |
| Sequence similarities | Belongs to the ZRANB2 family. Contains 2 RanBP2-type zinc fingers. |
| Sequence caution | The sequence AAD09746.1 differs from that shown. Reason: Frameshift at position 236. The sequence AAD09747.1 differs from that shown. Reason: Frameshift at position 236. The sequence BAD92805.1 differs from that shown. Reason: Intron retention. The sequence CAB66879.1 differs from that shown. Reason: Frameshift at position 236. |
Ontologies
| Keywords | |
|---|---|
| Biological process | mRNA processing mRNA splicing |
| Cellular component | Nucleus |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Repeat Zinc-finger |
| Ligand | Metal-binding RNA-binding Zinc |
| PTM | Acetylation Phosphoprotein |
| Technical term | 3D-structure Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | RNA splicing Traceable author statement Ref.1. Source: ProtInc mRNA processingInferred from electronic annotation. Source: UniProtKB-KW |
| Cellular_component | nucleus Traceable author statement Ref.1. Source: ProtInc |
| Molecular_function | RNA binding Traceable author statement Ref.1. Source: ProtInc sequence-specific DNA binding transcription factor activityTraceable author statement Ref.1. Source: ProtInc zinc ion bindingInferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| AKAP17A | Q02040 | 4 | EBI-1051583,EBI-1042725 | |
| ARRB1 | P49407 | 4 | EBI-1051583,EBI-743313 | |
| ARRB2 | P32121 | 4 | EBI-1051583,EBI-714559 |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: O95218-1) Also known as: ZIS-1; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: O95218-2) Also known as: ZIS-2; The sequence of this isoform differs from the canonical sequence as follows: 310-330: RRHRSSSGSSHSGSRSSSKKK → SQVIGENTKQP | ||||||
| Note: Phosphorylated on Ser-310 upon DNA damage, probably by ATM or ATR. Contains a phosphoserine at position 305. Contains a phosphoserine at position 307. Contains a phosphoserine at position 310. Contains a phosphothreonine at position 303. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||||
Molecule processing | |||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 330 | 330 | Zinc finger Ran-binding domain-containing protein 2 | PRO_0000066585 | |||||||||||||||||
Regions | |||||||||||||||||||||
| Zinc finger | 9 – 40 | 32 | RanBP2-type 1 | ||||||||||||||||||
| Zinc finger | 65 – 94 | 30 | RanBP2-type 2 | ||||||||||||||||||
| Region | 151 – 324 | 174 | Required for nuclear targeting | ||||||||||||||||||
| Compositional bias | 198 – 262 | 65 | Arg/Ser-rich | ||||||||||||||||||
Amino acid modifications | |||||||||||||||||||||
| Modified residue | 9 | 1 | Phosphoserine Ref.17 | ||||||||||||||||||
| Modified residue | 54 | 1 | N6-acetyllysine Ref.16 | ||||||||||||||||||
| Modified residue | 114 | 1 | Phosphotyrosine By similarity | ||||||||||||||||||
| Modified residue | 120 | 1 | Phosphoserine Ref.9 Ref.12 Ref.13 Ref.14 Ref.15 Ref.17 Ref.19 | ||||||||||||||||||
| Modified residue | 153 | 1 | Phosphoserine Ref.9 Ref.13 Ref.14 Ref.17 Ref.19 | ||||||||||||||||||
| Modified residue | 181 | 1 | Phosphoserine Ref.9 Ref.13 Ref.17 Ref.19 | ||||||||||||||||||
| Modified residue | 188 | 1 | Phosphoserine Ref.9 Ref.13 Ref.15 Ref.17 Ref.19 | ||||||||||||||||||
| Modified residue | 193 | 1 | Phosphoserine Ref.9 Ref.17 Ref.19 | ||||||||||||||||||
| Modified residue | 290 | 1 | Phosphoserine By similarity | ||||||||||||||||||
| Modified residue | 294 | 1 | Phosphoserine By similarity | ||||||||||||||||||
Natural variations | |||||||||||||||||||||
| Alternative sequence | 310 – 330 | 21 | RRHRS…SSKKK → SQVIGENTKQP in isoform 2. | VSP_024945 | |||||||||||||||||
| Natural variant | 207 | 1 | R → G. Ref.6 Ref.7 Corresponds to variant rs11583800 [ dbSNP | Ensembl ]. | VAR_030783 | |||||||||||||||||
Experimental info | |||||||||||||||||||||
| Sequence conflict | 41 | 1 | E → G in BAD96578. Ref.4 | ||||||||||||||||||
Secondary structure | |||||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||||
| Beta strand | 10 – 12 | 3 | |||||||||||||||||||
| Turn | 18 – 20 | 3 | |||||||||||||||||||
| Beta strand | 32 – 34 | 3 | |||||||||||||||||||
| Beta strand | 65 – 68 | 4 | |||||||||||||||||||
| Turn | 72 – 74 | 3 | |||||||||||||||||||
| Turn | 86 – 88 | 3 | |||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Identification, characterization and mapping of the human ZIS (zinc-finger, splicing) gene." Nakano M., Yoshiura K., Oikawa M., Miyoshi O., Yamada K., Kondo S., Miwa N., Soeda E., Jinno Y., Fujii T., Niikawa N. Gene 225:59-65(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2). Tissue: Fetal brain. |
| [2] | "Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs." Wiemann S., Weil B., Wellenreuther R., Gassenhuber J., Glassl S., Ansorge W., Boecher M., Bloecker H., Bauersachs S., Blum H., Lauber J., Duesterhoeft A., Beyer A., Koehrer K., Strack N., Mewes H.-W., Ottenwaelder B., Obermaier B. Poustka A.Genome Res. 11:422-435(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Tissue: Uterus. |
| [3] | Totoki Y., Toyoda A., Takeda T., Sakaki Y., Tanaka A., Yokoyama S., Ohara O., Nagase T., Kikuno R.F. Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Tissue: Brain. |
| [4] | Suzuki Y., Sugano S., Totoki Y., Toyoda A., Takeda T., Sakaki Y., Tanaka A., Yokoyama S. Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Tissue: Liver. |
| [5] | "The DNA sequence and biological annotation of human chromosome 1." Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K. Bentley D.R.Nature 441:315-321(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], VARIANT GLY-207. |
| [7] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), VARIANT GLY-207. Tissue: Skin. |
| [8] | "ZNF265 -- a novel spliceosomal protein able to induce alternative splicing." Adams D.J., van der Weyden L., Mayeda A., Stamm S., Morris B.J., Rasko J.E.J. J. Cell Biol. 154:25-32(2001) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, SUBCELLULAR LOCATION, INTERACTION WITH SNRNP70; U2AF1 AND CLK1. |
| [9] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-120; SER-153; SER-181; SER-188 AND SER-193, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [10] | "XE7: a novel splicing factor that interacts with ASF/SF2 and ZNF265." Mangs A.H., Speirs H.J.L., Goy C., Adams D.J., Markus M.A., Morris B.J. Nucleic Acids Res. 34:4976-4986(2006) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH AKAP17A. |
| [11] | "ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage." Matsuoka S., Ballif B.A., Smogorzewska A., McDonald E.R. III, Hurov K.E., Luo J., Bakalarski C.E., Zhao Z., Solimini N., Lerenthal Y., Shiloh Y., Gygi S.P., Elledge S.J. Science 316:1160-1166(2007) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-305; SER-307 AND SER-310 (ISOFORM 2), MASS SPECTROMETRY. Tissue: Embryonic kidney. |
| [12] | "Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis." Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D., Yates J.R. III J. Proteome Res. 7:1346-1351(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-120, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [13] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-120; SER-153; SER-181 AND SER-188, PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-303; SER-305; SER-307 AND SER-310 (ISOFORM 2), MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [14] | "Large-scale phosphoproteome analysis of human liver tissue by enrichment and fractionation of phosphopeptides with strong anion exchange chromatography." Han G., Ye M., Zhou H., Jiang X., Feng S., Jiang X., Tian R., Wan D., Zou H., Gu J. Proteomics 8:1346-1361(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-120 AND SER-153, MASS SPECTROMETRY. Tissue: Liver. |
| [15] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-120 AND SER-188, PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-305 AND SER-307 (ISOFORM 2), MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [16] | "Lysine acetylation targets protein complexes and co-regulates major cellular functions." Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T.C., Olsen J.V., Mann M. Science 325:834-840(2009) [PubMed] [Europe PMC] [Abstract] Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-54, MASS SPECTROMETRY. |
| [17] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-9; SER-120; SER-153; SER-181; SER-188 AND SER-193, PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-305; SER-307 AND SER-310 (ISOFORM 2), MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [18] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [19] | "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation." Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B. Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-120; SER-153; SER-181; SER-188 AND SER-193, PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-303; SER-305 AND SER-307 (ISOFORM 2), MASS SPECTROMETRY. |
| [20] | "The structure of the zinc finger domain from human splicing factor ZNF265 fold." Plambeck C.A., Kwan A.H.Y., Adams D.J., Westman B.J., van der Weyden L., Medcalf R.L., Morris B.J., Mackay J.P. J. Biol. Chem. 278:22805-22811(2003) [PubMed] [Europe PMC] [Abstract] Cited for: STRUCTURE BY NMR OF 1-40, RNA-BINDING. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | AF065391 mRNA. Translation: AAD09746.1. Frameshift. AF065392 mRNA. Translation: AAD09747.1. Frameshift. AL136945 mRNA. Translation: CAB66879.1. Frameshift. AB209568 mRNA. Translation: BAD92805.1. Sequence problems. AK222858 mRNA. Translation: BAD96578.1. AL512443 Genomic DNA. Translation: CAH70058.1. AL512443 Genomic DNA. Translation: CAH70059.1. CH471059 Genomic DNA. Translation: EAX06433.1. CH471059 Genomic DNA. Translation: EAX06435.1. BC039814 mRNA. Translation: AAH39814.1. | ||||||||||||||||||||||||
| IPI | IPI00029400. IPI00219866. | ||||||||||||||||||||||||
| RefSeq | NP_005446.2. NM_005455.4. NP_976225.1. NM_203350.2. | ||||||||||||||||||||||||
| UniGene | Hs.194718. | ||||||||||||||||||||||||
3D structure databases | |||||||||||||||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||||||||||||||
| ProteinModelPortal | O95218. | ||||||||||||||||||||||||
| ModBase | Search... | ||||||||||||||||||||||||
Protein-protein interaction databases | |||||||||||||||||||||||||
| IntAct | O95218. 7 interactions. | ||||||||||||||||||||||||
| STRING | 9606.ENSP00000359958. | ||||||||||||||||||||||||
PTM databases | |||||||||||||||||||||||||
| PhosphoSite | O95218. | ||||||||||||||||||||||||
Proteomic databases | |||||||||||||||||||||||||
| PaxDb | O95218. | ||||||||||||||||||||||||
| PRIDE | O95218. | ||||||||||||||||||||||||
Protocols and materials databases | |||||||||||||||||||||||||
| DNASU | 9406. | ||||||||||||||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||||||||||||||
Genome annotation databases | |||||||||||||||||||||||||
| Ensembl | ENST00000254821; ENSP00000254821; ENSG00000132485. ENST00000370920; ENSP00000359958; ENSG00000132485. | ||||||||||||||||||||||||
| GeneID | 9406. | ||||||||||||||||||||||||
| KEGG | hsa:9406. | ||||||||||||||||||||||||
| UCSC | uc001dfs.3. human. uc001dft.3. human. | ||||||||||||||||||||||||
Organism-specific databases | |||||||||||||||||||||||||
| CTD | 9406. | ||||||||||||||||||||||||
| GeneCards | GC01M071528. | ||||||||||||||||||||||||
| HGNC | HGNC:13058. ZRANB2. | ||||||||||||||||||||||||
| MIM | 604347. gene. | ||||||||||||||||||||||||
| neXtProt | NX_O95218. | ||||||||||||||||||||||||
| PharmGKB | PA37636. | ||||||||||||||||||||||||
| GenAtlas | Search... | ||||||||||||||||||||||||
Phylogenomic databases | |||||||||||||||||||||||||
| eggNOG | NOG275779. | ||||||||||||||||||||||||
| HOVERGEN | HBG066285. | ||||||||||||||||||||||||
| OMA | RSPERHH. | ||||||||||||||||||||||||
| OrthoDB | EOG42V8H3. | ||||||||||||||||||||||||
Gene expression databases | |||||||||||||||||||||||||
| Bgee | O95218. | ||||||||||||||||||||||||
| CleanEx | HS_ZRANB2. | ||||||||||||||||||||||||
| Genevestigator | O95218. | ||||||||||||||||||||||||
| GermOnline | ENSG00000132485. Homo sapiens. | ||||||||||||||||||||||||
Family and domain databases | |||||||||||||||||||||||||
| Gene3D | 4.10.1060.10. 2 hits. | ||||||||||||||||||||||||
| InterPro | IPR017337. UCP037956_Znf_RanB2. IPR001876. Znf_RanBP2. [Graphical view] | ||||||||||||||||||||||||
| Pfam | PF00641. zf-RanBP. 2 hits. [Graphical view] | ||||||||||||||||||||||||
| PIRSF | PIRSF037956. UCP037956_ZnF_Ran. 1 hit. | ||||||||||||||||||||||||
| SMART | SM00547. ZnF_RBZ. 2 hits. [Graphical view] | ||||||||||||||||||||||||
| PROSITE | PS01358. ZF_RANBP2_1. 2 hits. PS50199. ZF_RANBP2_2. 2 hits. [Graphical view] | ||||||||||||||||||||||||
| ProtoNet | Search... | ||||||||||||||||||||||||
Other | |||||||||||||||||||||||||
| EvolutionaryTrace | O95218. | ||||||||||||||||||||||||
| GenomeRNAi | 9406. | ||||||||||||||||||||||||
| NextBio | 35236. | ||||||||||||||||||||||||
| SOURCE | Search... | ||||||||||||||||||||||||
Entry information
| Entry name | ZRAB2_HUMAN | ||||||||
| Accession | Primary (citable) accession number: O95218 Secondary accession number(s): D3DQ75 Q9UP63 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 1 Human chromosome 1: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
