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Protein

Sciellin

Gene

SCEL

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

May function in the assembly or regulation of proteins in the cornified envelope. The LIM domain may be involved in homotypic or heterotypic associations and may function to localize sciellin to the cornified envelope.

GO - Molecular functioni

GO - Biological processi

  • embryo development Source: UniProtKB
  • epidermis development Source: UniProtKB
  • keratinocyte differentiation Source: UniProtKB

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Sciellin
Gene namesi
Name:SCEL
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 13

Organism-specific databases

EuPathDBiHostDB:ENSG00000136155.16.
HGNCiHGNC:10573. SCEL.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Membrane

Pathology & Biotechi

Organism-specific databases

DisGeNETi8796.
OpenTargetsiENSG00000136155.
PharmGKBiPA34986.

Polymorphism and mutation databases

BioMutaiSCEL.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000759031 – 688SciellinAdd BLAST688

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei83N6-acetyllysineBy similarity1
Modified residuei289PhosphoserineBy similarity1
Modified residuei389PhosphoserineBy similarity1

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

MaxQBiO95171.
PaxDbiO95171.
PeptideAtlasiO95171.
PRIDEiO95171.

PTM databases

iPTMnetiO95171.
PhosphoSitePlusiO95171.

Expressioni

Tissue specificityi

Highly expressed in esophagus. It is also expressed in keratinocytes, amniotic tissue, foreskin stratum spinosum and stratum granulosum, hair follicle and nail.

Gene expression databases

BgeeiENSG00000136155.
CleanExiHS_SCEL.
ExpressionAtlasiO95171. baseline and differential.
GenevisibleiO95171. HS.

Organism-specific databases

HPAiHPA039737.
HPA040154.

Interactioni

Binary interactionsi

Show more details

Protein-protein interaction databases

BioGridi114324. 12 interactors.
IntActiO95171. 8 interactors.
MINTiMINT-3975264.
STRINGi9606.ENSP00000302579.

Structurei

3D structure databases

ProteinModelPortaliO95171.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati251 – 2661Add BLAST16
Repeati267 – 2862Add BLAST20
Repeati287 – 3063Add BLAST20
Repeati307 – 3264Add BLAST20
Repeati327 – 3465Add BLAST20
Repeati347 – 3666Add BLAST20
Repeati367 – 3867Add BLAST20
Repeati387 – 4068Add BLAST20
Repeati407 – 4269Add BLAST20
Repeati427 – 44610Add BLAST20
Repeati447 – 46511Add BLAST19
Repeati466 – 48412Add BLAST19
Repeati485 – 50413Add BLAST20
Repeati505 – 52314Add BLAST19
Repeati524 – 54315Add BLAST20
Repeati544 – 56316Add BLAST20
Domaini619 – 685LIM zinc-bindingPROSITE-ProRule annotationAdd BLAST67

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni251 – 56316 X approximate tandem repeatsAdd BLAST313

Keywords - Domaini

LIM domain, Repeat

Phylogenomic databases

eggNOGiENOG410INGG. Eukaryota.
ENOG4111UEX. LUCA.
GeneTreeiENSGT00530000063872.
HOGENOMiHOG000294069.
HOVERGENiHBG023141.
InParanoidiO95171.
OMAiVVYTRTY.
OrthoDBiEOG091G09RH.
PhylomeDBiO95171.
TreeFamiTF335114.

Family and domain databases

InterProiView protein in InterPro
IPR001781. Znf_LIM.
SMARTiView protein in SMART
SM00132. LIM. 1 hit.
PROSITEiView protein in PROSITE
PS00478. LIM_DOMAIN_1. 1 hit.
PS50023. LIM_DOMAIN_2. 1 hit.

Sequences (3)i

Sequence statusi: Complete.

This entry describes 3 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: O95171-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MSNVTLRKMS PTGNEMKSTT QGTTRKQQDF HEVNKRRTFL QDNSWIKKRP
60 70 80 90 100
EEEKDENYGR VVLNRHNSHD ALDRKVNERD VPKATISRYS SDDTLDRISD
110 120 130 140 150
RNDAAKTYKA NTLDNQLTNR SMSMFRSLEV TKLQPGGSLN ANTSNTIAST
160 170 180 190 200
SATTPVKKKR QSWFPPPPPG YNASSSTGTR RREPGVHPPI PPKPSSPVSS
210 220 230 240 250
PNQLRQDNRQ IHPPKPGVYT ETNRSAERNI RSQDLDNIVK VATSLQRSDK
260 270 280 290 300
GEELDNLIKM NKSLNRNQGL DSLFRANPKV EEREKRAKSL ESLIYMSTRT
310 320 330 340 350
DKDGKGIQSL GSPIKVNQRT DKNEKGRQNL ESVAKVNARM NKTSRRSEDL
360 370 380 390 400
DNATEVNPKG HENTTGKKDL DGLIKVDPET NKNITRGQSL DNLIKVTPEV
410 420 430 440 450
KRSNQGSKDL NNFIKVYPGT EKSTEGGQSL DSLIKVTPER NRTNQGNQDL
460 470 480 490 500
ENLIKVIPSA NKSSEQGLDE HINVSPKAVK NTDGKQDLDK LIKVNPEIFT
510 520 530 540 550
NNQRNQDLAN LIKVNPAVIR NNQSQDLDNL IKVKPSALRN TNRDQNLENL
560 570 580 590 600
IEVNSHVSEN KNGSSNTGAK QAGPQDTVVY TRTYVENSKS PKDGYQENIS
610 620 630 640 650
GKYIQTVYST SDRSVIERDM CTYCRKPLGV ETKMILDELQ ICCHSTCFKC
660 670 680
EICKQPLENL QAGDSIWIYR QTIHCEPCYS KIMAKWIP
Length:688
Mass (Da):77,552
Last modified:December 16, 2008 - v2
Checksum:iB97F62DD560B57C3
GO
Isoform 2 (identifier: O95171-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     231-251: RSQDLDNIVKVATSLQRSDKG → S

Show »
Length:668
Mass (Da):75,326
Checksum:i119DB006BB85EC13
GO
Isoform 3 (identifier: O95171-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     160-181: Missing.
     367-386: Missing.

Note: No experimental confirmation available.
Show »
Length:646
Mass (Da):72,843
Checksum:iBDA3D0960363AEFC
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti37R → G in BAH13533 (PubMed:14702039).Curated1
Sequence conflicti124M → V in AAH47536 (PubMed:15489334).Curated1
Sequence conflicti201P → T in AAH47536 (PubMed:15489334).Curated1
Sequence conflicti337N → D in AAC78461 (PubMed:9813070).Curated1
Sequence conflicti340M → T in AAC78461 (PubMed:9813070).Curated1
Sequence conflicti680S → P in BAD96440 (Ref. 3) Curated1

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural variantiVAR_047920336V → L. Corresponds to variant dbSNP:rs34164479Ensembl.1
Natural variantiVAR_047921386R → K. Corresponds to variant dbSNP:rs2274016Ensembl.1
Natural variantiVAR_047922480K → R. Corresponds to variant dbSNP:rs8002725Ensembl.1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_045288160 – 181Missing in isoform 3. 1 PublicationAdd BLAST22
Alternative sequenceiVSP_035980231 – 251RSQDL…RSDKG → S in isoform 2. 2 PublicationsAdd BLAST21
Alternative sequenceiVSP_045289367 – 386Missing in isoform 3. 1 PublicationAdd BLAST20

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF045941 mRNA. Translation: AAC78461.1.
AK301659 mRNA. Translation: BAH13533.1.
AK222720 mRNA. Translation: BAD96440.1.
AL137140 Genomic DNA. Translation: CAH70475.1.
AL137140 Genomic DNA. Translation: CAH70476.1.
CH471093 Genomic DNA. Translation: EAW80568.1.
CH471093 Genomic DNA. Translation: EAW80569.1.
BC047536 mRNA. Translation: AAH47536.1.
CCDSiCCDS53877.1. [O95171-3]
CCDS9458.1. [O95171-2]
CCDS9459.1. [O95171-1]
RefSeqiNP_001154178.1. NM_001160706.1. [O95171-3]
NP_003834.3. NM_003843.3. [O95171-2]
NP_659001.2. NM_144777.2. [O95171-1]
UniGeneiHs.534699.

Genome annotation databases

EnsembliENST00000349847; ENSP00000302579; ENSG00000136155. [O95171-1]
ENST00000377246; ENSP00000366454; ENSG00000136155. [O95171-2]
ENST00000535157; ENSP00000437895; ENSG00000136155. [O95171-3]
GeneIDi8796.
KEGGihsa:8796.
UCSCiuc001vki.4. human. [O95171-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Similar proteinsi

Entry informationi

Entry nameiSCEL_HUMAN
AccessioniPrimary (citable) accession number: O95171
Secondary accession number(s): B7Z797
, F5H651, Q53H61, Q5W0S8, Q5W0S9, Q86X00
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 23, 2002
Last sequence update: December 16, 2008
Last modified: September 27, 2017
This is version 131 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Human chromosome 13
    Human chromosome 13: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot