Reviewed,
UniProtKB/Swiss-Prot O95071 (UBR5_HUMAN)
Last modified
June 16, 2009.
Version 94.
History...
Clusters with 100%,
90%,
50% identity |
Documents (7) |
Third-party data |
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Names and origin
| Protein names | Recommended name: E3 ubiquitin-protein ligase UBR5 EC=6.3.2.- Alternative name(s): E3 ubiquitin-protein ligase, HECT domain-containing 1 Hyperplastic discs protein homolog Short name=hHYD Progestin-induced protein | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 2799 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | E3 ubiquitin-protein ligase which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific amino-terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation By similarity. May be involved in maturation and/or transcriptional regulation of mRNA. May play a role in control of cell cycle progression. May have tumor suppressor function. Regulates DNA topoisomerase II binding protein (TopBP1) in the DNA damage response. Plays an essential role in extraembryonic development. |
| Pathway | |
| Subunit structure | Binds TOPBP1. |
| Subcellular location | |
| Tissue specificity | Widely expressed. Most abundant in testis and expressed at high levels in brain, pituitary and kidney. |
| Post-translational modification | Phosphorylated upon DNA damage, probably by ATM or ATR. Ref.7 Ref.8 Ref.9 Ref.10 Ref.11 Ref.12 Ref.13 Ref.14 Ref.15 |
| Miscellaneous | A cysteine residue is required for ubiquitin-thioester formation. |
| Sequence similarities | Contains 1 HECT (E6AP-type E3 ubiquitin-protein ligase) domain. Contains 1 PABC domain. Contains 1 UBR-type zinc finger. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| MAGED1 | Q9Y5V3 | 1 | EBI-358329,EBI-716006 | |
| MCRS1 | Q96EZ8 | 1 | EBI-358329,EBI-348259 |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||||||||||
Molecule processing | |||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 2799 | 2799 | E3 ubiquitin-protein ligase UBR5 | PRO_0000086931 | |||||||||||||||||||||||
Regions | |||||||||||||||||||||||||||
| Domain | 2377 – 2454 | 78 | PABC | ||||||||||||||||||||||||
| Domain | 2462 – 2799 | 338 | HECT | ||||||||||||||||||||||||
| Zinc finger | 1177 – 1245 | 69 | UBR-type | ||||||||||||||||||||||||
| Compositional bias | 940 – 945 | 6 | Poly-Glu | ||||||||||||||||||||||||
| Compositional bias | 980 – 985 | 6 | Poly-Ser | ||||||||||||||||||||||||
| Compositional bias | 1528 – 1537 | 10 | Poly-Ser | ||||||||||||||||||||||||
| Compositional bias | 1671 – 1681 | 11 | Poly-Ser | ||||||||||||||||||||||||
| Compositional bias | 1762 – 1768 | 7 | Poly-Ala | ||||||||||||||||||||||||
| Compositional bias | 1986 – 1997 | 12 | Asp/Glu-rich (acidic) | ||||||||||||||||||||||||
| Compositional bias | 2036 – 2059 | 24 | Pro-rich | ||||||||||||||||||||||||
| Compositional bias | 2329 – 2348 | 20 | Arg/Glu-rich (mixed charge) | ||||||||||||||||||||||||
| Compositional bias | 2357 – 2366 | 10 | Arg/Asp-rich (mixed charge) | ||||||||||||||||||||||||
| Compositional bias | 2489 – 2500 | 12 | Asp/Glu-rich (acidic) | ||||||||||||||||||||||||
| Compositional bias | 2737 – 2757 | 21 | Pro-rich | ||||||||||||||||||||||||
Sites | |||||||||||||||||||||||||||
| Active site | 2768 | 1 | Glycyl thioester intermediate By similarity | ||||||||||||||||||||||||
Amino acid modifications | |||||||||||||||||||||||||||
| Modified residue | 139 | 1 | Phosphoserine Ref.14 | ||||||||||||||||||||||||
| Modified residue | 287 | 1 | Phosphoserine Ref.7 | ||||||||||||||||||||||||
| Modified residue | 327 | 1 | Phosphoserine Ref.10 Ref.15 | ||||||||||||||||||||||||
| Modified residue | 598 | 1 | Phosphoserine Ref.12 | ||||||||||||||||||||||||
| Modified residue | 1308 | 1 | Phosphoserine Ref.15 | ||||||||||||||||||||||||
| Modified residue | 1549 | 1 | Phosphoserine Ref.9 Ref.13 Ref.14 Ref.15 | ||||||||||||||||||||||||
| Modified residue | 1746 | 1 | Phosphotyrosine Ref.8 | ||||||||||||||||||||||||
| Modified residue | 1969 | 1 | Phosphothreonine Ref.14 Ref.15 | ||||||||||||||||||||||||
| Modified residue | 2071 | 1 | Phosphoserine Ref.11 | ||||||||||||||||||||||||
| Modified residue | 2486 | 1 | Phosphoserine Ref.15 | ||||||||||||||||||||||||
Natural variations | |||||||||||||||||||||||||||
| Natural variant | 2150 | 1 | S → R: dbSNP rs1062822. | VAR_051466 | |||||||||||||||||||||||
Experimental info | |||||||||||||||||||||||||||
| Mutagenesis | 2768 | 1 | C → A: Loss of ubiquitin binding. Ref.17 | ||||||||||||||||||||||||
| Sequence conflict | 134 | 1 | S → P in AAF88143. Ref.2 | ||||||||||||||||||||||||
| Sequence conflict | 229 | 1 | E → K in AAF88143. Ref.2 | ||||||||||||||||||||||||
| Sequence conflict | 258 | 1 | S → Y in AAF88143. Ref.2 | ||||||||||||||||||||||||
| Sequence conflict | 374 – 375 | 2 | IG → M in AAF88143. Ref.2 | ||||||||||||||||||||||||
| Sequence conflict | 772 | 1 | D → H in AAF88143. Ref.2 | ||||||||||||||||||||||||
| Sequence conflict | 780 | 1 | Q → R in AAF88143. Ref.2 | ||||||||||||||||||||||||
| Sequence conflict | 884 | 1 | D → G in AAF88143. Ref.2 | ||||||||||||||||||||||||
| Sequence conflict | 1811 | 1 | S → P in AAF88143. Ref.2 | ||||||||||||||||||||||||
| Sequence conflict | 2144 | 1 | L → H in AAF88143. Ref.2 | ||||||||||||||||||||||||
| Sequence conflict | 2282 | 1 | K → R in AAF88143. Ref.2 | ||||||||||||||||||||||||
| Sequence conflict | 2474 | 1 | Missing in BAA74919. Ref.3 | ||||||||||||||||||||||||
| Sequence conflict | 2489 | 1 | D → N in AAF88143. Ref.2 | ||||||||||||||||||||||||
Secondary structure | |||||||||||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||||||||||
| Helix | 182 – 184 | 3 | |||||||||||||||||||||||||
| Helix | 187 – 196 | 10 | |||||||||||||||||||||||||
| Helix | 202 – 211 | 10 | |||||||||||||||||||||||||
| Turn | 212 – 214 | 3 | |||||||||||||||||||||||||
| Helix | 216 – 224 | 9 | |||||||||||||||||||||||||
| Helix | 2394 – 2408 | 15 | |||||||||||||||||||||||||
| Helix | 2410 – 2412 | 3 | |||||||||||||||||||||||||
| Helix | 2413 – 2420 | 8 | |||||||||||||||||||||||||
| Helix | 2425 – 2433 | 9 | |||||||||||||||||||||||||
| Helix | 2435 – 2452 | 18 | |||||||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Identification of a human HECT family protein with homology to the Drosophila tumor suppressor gene hyperplastic discs." Callaghan M.J., Russell A.J., Woollatt E., Sutherland G.R., Sutherland R.L., Watts C.K.W. Oncogene 17:3479-3491(1998) [PubMed: 10030672] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA]. Tissue: Heart and Placenta. |
| [2] | "Cooperation of HECT-domain ubiquitin ligase hHYD and DNA topoisomerase II-binding protein for DNA damage response." Honda Y., Tojo M., Matsuzaki K., Anan T., Matsumoto M., Ando M., Saya H., Nakao M. J. Biol. Chem. 277:3599-3605(2002) [PubMed: 11714696] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], INTERACTION WITH TOPBP1. Tissue: Fetal brain. |
| [3] | "Prediction of the coding sequences of unidentified human genes. XII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro." Nagase T., Ishikawa K., Suyama M., Kikuno R., Hirosawa M., Miyajima N., Tanaka A., Kotani H., Nomura N., Ohara O. DNA Res. 5:355-364(1998) [PubMed: 10048485] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Brain. |
| [4] | "Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones." Nakajima D., Okazaki N., Yamakawa H., Kikuno R., Ohara O., Nagase T. DNA Res. 9:99-106(2002) [PubMed: 12168954] [Abstract] Cited for: SEQUENCE REVISION. |
| [5] | Ohara O., Nagase T., Kikuno R., Ishikawa K., Suyama M. Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases Cited for: SEQUENCE REVISION. |
| [6] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Brain. |
| [7] | "Global phosphoproteome of HT-29 human colon adenocarcinoma cells." Kim J.-E., Tannenbaum S.R., White F.M. J. Proteome Res. 4:1339-1346(2005) [PubMed: 16083285] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-287, MASS SPECTROMETRY. |
| [8] | "Immunoaffinity profiling of tyrosine phosphorylation in cancer cells." Rush J., Moritz A., Lee K.A., Guo A., Goss V.L., Spek E.J., Zhang H., Zha X.-M., Polakiewicz R.D., Comb M.J. Nat. Biotechnol. 23:94-101(2005) [PubMed: 15592455] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-1746, MASS SPECTROMETRY. |
| [9] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed: 17081983] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1549, MASS SPECTROMETRY. Tissue: Epithelium. |
| [10] | "Phosphoproteome analysis of the human mitotic spindle." Nousiainen M., Sillje H.H.W., Sauer G., Nigg E.A., Koerner R. Proc. Natl. Acad. Sci. U.S.A. 103:5391-5396(2006) [PubMed: 16565220] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-327, MASS SPECTROMETRY. Tissue: Epithelium. |
| [11] | "ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage." Matsuoka S., Ballif B.A., Smogorzewska A., McDonald E.R. III, Hurov K.E., Luo J., Bakalarski C.E., Zhao Z., Solimini N., Lerenthal Y., Shiloh Y., Gygi S.P., Elledge S.J. Science 316:1160-1166(2007) [PubMed: 17525332] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-2071, MASS SPECTROMETRY. |
| [12] | "Phosphoproteome of resting human platelets." Zahedi R.P., Lewandrowski U., Wiesner J., Wortelkamp S., Moebius J., Schuetz C., Walter U., Gambaryan S., Sickmann A. J. Proteome Res. 7:526-534(2008) [PubMed: 18088087] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-598, MASS SPECTROMETRY. Tissue: Platelet. |
| [13] | "Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis." Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D., Yates J.R. III J. Proteome Res. 7:1346-1351(2008) [PubMed: 18220336] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1549, MASS SPECTROMETRY. |
| [14] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed: 18691976] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-139; SER-1549 AND THR-1969, MASS SPECTROMETRY. |
| [15] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-327; SER-1308; SER-1549; THR-1969 AND SER-2486, MASS SPECTROMETRY. |
| [16] | Colinge J., Superti-Furga G., Bennett K.L. Submitted (OCT-2008) to UniProtKB Cited for: IDENTIFICATION [LARGE SCALE ANALYSIS], MASS SPECTROMETRY. |
| [17] | "X-ray structure of the human hyperplastic discs protein: an ortholog of the C-terminal domain of poly(A)-binding protein." Deo R.C., Sonenberg N., Burley S.K. Proc. Natl. Acad. Sci. U.S.A. 98:4414-4419(2001) [PubMed: 11287654] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.04 ANGSTROMS) OF 2391-2455, MUTAGENESIS OF CYS-2768. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AF006010 mRNA. Translation: AAD01259.2. U95000 mRNA. Translation: AAF88143.1. AB020703 mRNA. Translation: BAA74919.3. Different initiation. BC137234 mRNA. Translation: AAI37235.1. | |||||||||||||||||||
| IPI | IPI00026320. | ||||||||||||||||||
| RefSeq | NP_056986.2. | ||||||||||||||||||
| UniGene | Hs.591856 | ||||||||||||||||||
3D structure databases | |||||||||||||||||||
| |||||||||||||||||||
| ModBase | Search... | ||||||||||||||||||
Protein-protein interaction databases | |||||||||||||||||||
| IntAct | O95071. 10 interactions. | ||||||||||||||||||
PTM databases | |||||||||||||||||||
| PhosphoSite | O95071. | ||||||||||||||||||
Proteomic databases | |||||||||||||||||||
| PRIDE | O95071. | ||||||||||||||||||
Genome annotation databases | |||||||||||||||||||
| Ensembl | ENSG00000104517. Homo sapiens. [Contig view] | ||||||||||||||||||
| GeneID | 51366. | ||||||||||||||||||
| KEGG | hsa:51366. | ||||||||||||||||||
Organism-specific databases | |||||||||||||||||||
| GeneCards | GC08M103336. GC08M103338. | ||||||||||||||||||
| H-InvDB | HIX0007699. | ||||||||||||||||||
| HGNC | HGNC:16806. UBR5. | ||||||||||||||||||
| MIM | 608413. gene. | ||||||||||||||||||
| PharmGKB | PA142671917. | ||||||||||||||||||
| HUGE | Search... | ||||||||||||||||||
| GenAtlas | Search... | ||||||||||||||||||
Phylogenomic databases | |||||||||||||||||||
| HOGENOM | O95071. | ||||||||||||||||||
| HOVERGEN | O95071. | ||||||||||||||||||
| OMA | O95071. MPYKRRR. | ||||||||||||||||||
Gene expression databases | |||||||||||||||||||
| ArrayExpress | O95071. | ||||||||||||||||||
| Bgee | O95071. | ||||||||||||||||||
| CleanEx | HS_UBR5. | ||||||||||||||||||
| GermOnline | ENSG00000104517. Homo sapiens. | ||||||||||||||||||
Family and domain databases | |||||||||||||||||||
| InterPro | IPR000569. HECT. IPR002004. PABP_HYD. IPR003126. Znf_N-recognin. IPR013993. Znf_N-recognin_met. [Graphical view] | ||||||||||||||||||
| Gene3D | G3DSA:1.10.1900.10. PABP_HYD. 1 hit. | ||||||||||||||||||
| Pfam | PF00632. HECT. 1 hit. PF00658. PABP. 1 hit. PF02207. zf-UBR. 1 hit. [Graphical view] | ||||||||||||||||||
| SMART | SM00119. HECTc. 1 hit. SM00517. PolyA. 1 hit. SM00396. ZnF_UBR1. 1 hit. [Graphical view] | ||||||||||||||||||
| PROSITE | PS50237. HECT. 1 hit. PS51309. PABC. 1 hit. PS51157. ZF_UBR. 1 hit. [Graphical view] | ||||||||||||||||||
| ProtoNet | Search... | ||||||||||||||||||
Other Resources | |||||||||||||||||||
| NextBio | 54837. | ||||||||||||||||||
| SOURCE | Search... | ||||||||||||||||||
Entry information
| Entry name | UBR5_HUMAN | ||||||||
| Accession | Primary (citable) accession number: O95071 Secondary accession number(s): B2RP24, O94970, Q9NPL3 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
Relevant documents
| Human chromosome 8 Human chromosome 8: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PATHWAY comments Index of metabolic and biosynthesis pathways |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with


