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Protein

WD repeat-containing protein 47

Gene

WDR47

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Developmental protein

Enzyme and pathway databases

BioCyciZFISH:ENSG00000085433-MONOMER.
SignaLinkiO94967.

Names & Taxonomyi

Protein namesi
Recommended name:
WD repeat-containing protein 47
Alternative name(s):
Neuronal enriched MAP-interacting protein
Short name:
Nemitin
Gene namesi
Name:WDR47
Synonyms:KIAA0893
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 1

Organism-specific databases

HGNCiHGNC:29141. WDR47.

Subcellular locationi

  • Cytoplasmcytoskeleton By similarity

  • Note: Localization along microtubules is mediated by MAP1S.By similarity

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Cytoskeleton, Microtubule

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000085433.
PharmGKBiPA134937302.

Polymorphism and mutation databases

BioMutaiWDR47.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000513971 – 919WD repeat-containing protein 47Add BLAST919

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei285PhosphothreonineCombined sources1
Modified residuei289PhosphoserineBy similarity1
Modified residuei292PhosphoserineCombined sources1
Modified residuei297PhosphoserineCombined sources1
Modified residuei312PhosphoserineCombined sources1
Modified residuei422PhosphoserineCombined sources1
Modified residuei542PhosphothreonineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

EPDiO94967.
MaxQBiO94967.
PaxDbiO94967.
PeptideAtlasiO94967.
PRIDEiO94967.

PTM databases

iPTMnetiO94967.
PhosphoSitePlusiO94967.

Expressioni

Gene expression databases

BgeeiENSG00000085433.
CleanExiHS_WDR47.
ExpressionAtlasiO94967. baseline and differential.
GenevisibleiO94967. HS.

Organism-specific databases

HPAiHPA027287.
HPA027289.

Interactioni

Subunit structurei

Interacts with MAP1S (via WD repeats).By similarity

Binary interactionsi

WithEntry#Exp.IntActNotes
TCL1AP562793EBI-723239,EBI-749995

Protein-protein interaction databases

BioGridi116574. 14 interactors.
IntActiO94967. 5 interactors.
MINTiMINT-1381291.
STRINGi9606.ENSP00000383599.

Structurei

3D structure databases

ProteinModelPortaliO94967.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini10 – 42LisHPROSITE-ProRule annotationAdd BLAST33
Domaini45 – 102CTLHPROSITE-ProRule annotationAdd BLAST58
Repeati604 – 643WD 1Add BLAST40
Repeati659 – 698WD 2Add BLAST40
Repeati706 – 748WD 3Add BLAST43
Repeati753 – 791WD 4Add BLAST39
Repeati798 – 837WD 5Add BLAST40
Repeati840 – 879WD 6Add BLAST40
Repeati886 – 918WD 7Add BLAST33

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi425 – 474Gln-richAdd BLAST50

Sequence similaritiesi

Contains 1 CTLH domain.PROSITE-ProRule annotation
Contains 1 LisH domain.PROSITE-ProRule annotation
Contains 7 WD repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, WD repeat

Phylogenomic databases

eggNOGiKOG0641. Eukaryota.
ENOG410YF9K. LUCA.
GeneTreeiENSGT00760000119239.
HOGENOMiHOG000231412.
HOVERGENiHBG058798.
InParanoidiO94967.
OMAiIDPSAHD.
OrthoDBiEOG091G08TY.
PhylomeDBiO94967.
TreeFamiTF312810.

Family and domain databases

Gene3Di2.130.10.10. 2 hits.
InterProiIPR024977. Apc4_WD40_dom.
IPR006595. CTLH_C.
IPR006594. LisH.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF12894. ANAPC4_WD40. 1 hit.
PF00400. WD40. 2 hits.
[Graphical view]
SMARTiSM00668. CTLH. 1 hit.
SM00667. LisH. 1 hit.
SM00320. WD40. 7 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiPS50897. CTLH. 1 hit.
PS50896. LISH. 1 hit.
PS00678. WD_REPEATS_1. 1 hit.
PS50082. WD_REPEATS_2. 5 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]

Sequences (4)i

Sequence statusi: Complete.

This entry describes 4 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: O94967-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MTAEETVNVK EVEIIKLILD FLNSKKLHIS MLALEKESGV INGLFSDDML
60 70 80 90 100
FLRQLILDGQ WDEVLQFIQP LECMEKFDKK RFRYIILKQK FLEALCVNNA
110 120 130 140 150
MSAEDEPQHL EFTMQEAVQC LHALEEYCPS KDDYSKLCLL LTLPRLTNHA
160 170 180 190 200
EFKDWNPSTA RVHCFEEACV MVAEFIPADR KLSEAGFKAS NNRLFQLVMK
210 220 230 240 250
GLLYECCVEF CQSKATGEEI TESEVLLGID LLCGNGCDDL DLSLLSWLQN
260 270 280 290 300
LPSSVFSCAF EQKMLNIHVD KLLKPTKAAY ADLLTPLISK LSPYPSSPMR
310 320 330 340 350
RPQSADAYMT RSLNPALDGL TCGLTSHDKR ISDLGNKTSP MSHSFANFHY
360 370 380 390 400
PGVQNLSRSL MLENTECHSI YEESPERDTP VDAQRPIGSE ILGQSSVSEK
410 420 430 440 450
EPANGAQNPG PAKQEKNELR DSTEQFQEYY RQRLRYQQHL EQKEQQRQIY
460 470 480 490 500
QQMLLEGGVN QEDGPDQQQN LTEQFLNRSI QKLGELNIGM DGLGNEVSAL
510 520 530 540 550
NQQCNGSKGN GSNGSSVTSF TTPPQDSSQR LTHDASNIHT STPRNPGSTN
560 570 580 590 600
HIPFLEESPC GSQISSEHSV IKPPLGDSPG SLSRSKGEED DKSKKQFVCI
610 620 630 640 650
NILEDTQAVR AVAFHPAGGL YAVGSNSKTL RVCAYPDVID PSAHETPKQP
660 670 680 690 700
VVRFKRNKHH KGSIYCVAWS PCGQLLATGS NDKYVKVLPF NAETCNATGP
710 720 730 740 750
DLEFSMHDGT IRDLAFMEGP ESGGAILISA GAGDCNIYTT DCQRGQGLHA
760 770 780 790 800
LSGHTGHILA LYTWSGWMIA SGSQDKTVRF WDLRVPSCVR VVGTTFHGTG
810 820 830 840 850
SAVASVAVDP SGRLLATGQE DSSCMLYDIR GGRMVQSYHP HSSDVRSVRF
860 870 880 890 900
SPGAHYLLTG SYDMKIKVTD LQGDLTKQLP IMVVGEHKDK VIQCRWHTQD
910
LSFLSSSADR TVTLWTYNG
Length:919
Mass (Da):101,949
Last modified:May 1, 1999 - v1
Checksum:i2BC571E17DB67166
GO
Isoform 2 (identifier: O94967-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     54-81: Missing.

Note: No experimental confirmation available.
Show »
Length:891
Mass (Da):98,516
Checksum:i5BDD9AC951F800D1
GO
Isoform 3 (identifier: O94967-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     377-377: R → RS

Show »
Length:920
Mass (Da):102,036
Checksum:i4C68054216E3515C
GO
Isoform 4 (identifier: O94967-4) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     109-109: H → HVRFLFLK
     377-377: R → RS

Note: No experimental confirmation available.
Show »
Length:927
Mass (Da):102,940
Checksum:iC9B4FE4F4992A2EE
GO

Sequence cautioni

The sequence AK225781 differs from that shown. Reason: Frameshift at position 416.Curated
The sequence BAA74916 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti298P → Q in AAH39254 (PubMed:15489334).Curated1
Sequence conflicti369S → C in AAH39254 (PubMed:15489334).Curated1
Sequence conflicti698T → TVS in AAH39254 (PubMed:15489334).Curated1
Sequence conflicti779R → G in AAH34964 (PubMed:15489334).Curated1
Sequence conflicti789V → A in AAH34964 (PubMed:15489334).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_01209354 – 81Missing in isoform 2. 1 PublicationAdd BLAST28
Alternative sequenceiVSP_046727109H → HVRFLFLK in isoform 4. 1 Publication1
Alternative sequenceiVSP_035045377R → RS in isoform 3 and isoform 4. 3 Publications1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB020700 mRNA. Translation: BAA74916.2. Different initiation.
AK289789 mRNA. Translation: BAF82478.1.
AK225781 mRNA. No translation available.
BX679664, AL449266 Genomic DNA. Translation: CAH71325.1.
BX679664, AL449266 Genomic DNA. Translation: CAH71326.1.
BX679664, AL449266 Genomic DNA. Translation: CAH71327.1.
AL449266, BX679664 Genomic DNA. Translation: CAI14351.1.
AL449266, BX679664 Genomic DNA. Translation: CAI14352.1.
AL449266, BX679664 Genomic DNA. Translation: CAI14353.1.
CH471122 Genomic DNA. Translation: EAW56350.1.
CH471122 Genomic DNA. Translation: EAW56351.1.
BC034964 mRNA. Translation: AAH34964.1.
BC039254 mRNA. Translation: AAH39254.1.
CCDSiCCDS30787.1. [O94967-3]
CCDS44186.1. [O94967-4]
CCDS44187.1. [O94967-1]
RefSeqiNP_001136022.1. NM_001142550.1. [O94967-4]
NP_001136023.1. NM_001142551.1. [O94967-1]
NP_055784.3. NM_014969.5. [O94967-3]
XP_016856186.1. XM_017000697.1. [O94967-1]
UniGeneiHs.570055.

Genome annotation databases

EnsembliENST00000361054; ENSP00000354339; ENSG00000085433. [O94967-2]
ENST00000369962; ENSP00000358979; ENSG00000085433. [O94967-1]
ENST00000369965; ENSP00000358982; ENSG00000085433. [O94967-3]
ENST00000400794; ENSP00000383599; ENSG00000085433. [O94967-4]
GeneIDi22911.
KEGGihsa:22911.
UCSCiuc001dwi.4. human. [O94967-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB020700 mRNA. Translation: BAA74916.2. Different initiation.
AK289789 mRNA. Translation: BAF82478.1.
AK225781 mRNA. No translation available.
BX679664, AL449266 Genomic DNA. Translation: CAH71325.1.
BX679664, AL449266 Genomic DNA. Translation: CAH71326.1.
BX679664, AL449266 Genomic DNA. Translation: CAH71327.1.
AL449266, BX679664 Genomic DNA. Translation: CAI14351.1.
AL449266, BX679664 Genomic DNA. Translation: CAI14352.1.
AL449266, BX679664 Genomic DNA. Translation: CAI14353.1.
CH471122 Genomic DNA. Translation: EAW56350.1.
CH471122 Genomic DNA. Translation: EAW56351.1.
BC034964 mRNA. Translation: AAH34964.1.
BC039254 mRNA. Translation: AAH39254.1.
CCDSiCCDS30787.1. [O94967-3]
CCDS44186.1. [O94967-4]
CCDS44187.1. [O94967-1]
RefSeqiNP_001136022.1. NM_001142550.1. [O94967-4]
NP_001136023.1. NM_001142551.1. [O94967-1]
NP_055784.3. NM_014969.5. [O94967-3]
XP_016856186.1. XM_017000697.1. [O94967-1]
UniGeneiHs.570055.

3D structure databases

ProteinModelPortaliO94967.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi116574. 14 interactors.
IntActiO94967. 5 interactors.
MINTiMINT-1381291.
STRINGi9606.ENSP00000383599.

PTM databases

iPTMnetiO94967.
PhosphoSitePlusiO94967.

Polymorphism and mutation databases

BioMutaiWDR47.

Proteomic databases

EPDiO94967.
MaxQBiO94967.
PaxDbiO94967.
PeptideAtlasiO94967.
PRIDEiO94967.

Protocols and materials databases

DNASUi22911.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000361054; ENSP00000354339; ENSG00000085433. [O94967-2]
ENST00000369962; ENSP00000358979; ENSG00000085433. [O94967-1]
ENST00000369965; ENSP00000358982; ENSG00000085433. [O94967-3]
ENST00000400794; ENSP00000383599; ENSG00000085433. [O94967-4]
GeneIDi22911.
KEGGihsa:22911.
UCSCiuc001dwi.4. human. [O94967-1]

Organism-specific databases

CTDi22911.
GeneCardsiWDR47.
HGNCiHGNC:29141. WDR47.
HPAiHPA027287.
HPA027289.
MIMi615734. gene.
neXtProtiNX_O94967.
OpenTargetsiENSG00000085433.
PharmGKBiPA134937302.
HUGEiSearch...
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG0641. Eukaryota.
ENOG410YF9K. LUCA.
GeneTreeiENSGT00760000119239.
HOGENOMiHOG000231412.
HOVERGENiHBG058798.
InParanoidiO94967.
OMAiIDPSAHD.
OrthoDBiEOG091G08TY.
PhylomeDBiO94967.
TreeFamiTF312810.

Enzyme and pathway databases

BioCyciZFISH:ENSG00000085433-MONOMER.
SignaLinkiO94967.

Miscellaneous databases

ChiTaRSiWDR47. human.
GeneWikiiWDR47.
GenomeRNAii22911.
PROiO94967.
SOURCEiSearch...

Gene expression databases

BgeeiENSG00000085433.
CleanExiHS_WDR47.
ExpressionAtlasiO94967. baseline and differential.
GenevisibleiO94967. HS.

Family and domain databases

Gene3Di2.130.10.10. 2 hits.
InterProiIPR024977. Apc4_WD40_dom.
IPR006595. CTLH_C.
IPR006594. LisH.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF12894. ANAPC4_WD40. 1 hit.
PF00400. WD40. 2 hits.
[Graphical view]
SMARTiSM00668. CTLH. 1 hit.
SM00667. LisH. 1 hit.
SM00320. WD40. 7 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiPS50897. CTLH. 1 hit.
PS50896. LISH. 1 hit.
PS00678. WD_REPEATS_1. 1 hit.
PS50082. WD_REPEATS_2. 5 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiWDR47_HUMAN
AccessioniPrimary (citable) accession number: O94967
Secondary accession number(s): A8MX09
, Q5TYV7, Q5TYV8, Q5TYV9, Q8IXT7, Q8IYU9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 20, 2001
Last sequence update: May 1, 1999
Last modified: November 2, 2016
This is version 138 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 1
    Human chromosome 1: entries, gene names and cross-references to MIM
  2. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.