O94806 (KPCD3_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 124.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Serine/threonine-protein kinase D3 EC=2.7.11.13 Alternative name(s): Protein kinase C nu type Protein kinase EPK2 nPKC-nu | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 890 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Converts transient diacylglycerol (DAG) signals into prolonged physiological effects, downstream of PKC. Involved in resistance to oxidative stress By similarity. |
| Catalytic activity | ATP + a protein = ADP + a phosphoprotein. |
| Cofactor | Magnesium By similarity. |
| Enzyme regulation | Activated by DAG and phorbol esters. Phorbol-ester/DAG-type domains 1 and 2 bind both DAG and phorbol ester with high affinity and mediate translocation to the cell membrane. Autophosphorylation of Ser-735 and phosphorylation of Ser-731 by PKC relieves auto-inhibition by the PH domain. Ref.7 |
| Subcellular location | Cytoplasm. Membrane. Note: Translocation to the cell membrane is required for kinase activation. Ref.7 |
| Tissue specificity | Ubiquitous. |
| Sequence similarities | Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. PKD subfamily. Contains 1 PH domain. Contains 2 phorbol-ester/DAG-type zinc fingers. Contains 1 protein kinase domain. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| itself | 2 | EBI-1255366,EBI-1255366 | ||
| VAMP2 | P63027 | 7 | EBI-1255366,EBI-520113 |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: O94806-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: O94806-2) The sequence of this isoform differs from the canonical sequence as follows: 595-611: HRKTGRDVAIKVIDKMR → QLQPFAYCTHYFKNWKM 612-890: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||||||||||
Molecule processing | |||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 890 | 890 | Serine/threonine-protein kinase D3 | PRO_0000055717 | |||||||||||||||||||||||
Regions | |||||||||||||||||||||||||||
| Domain | 416 – 532 | 117 | PH | ||||||||||||||||||||||||
| Domain | 576 – 832 | 257 | Protein kinase | ||||||||||||||||||||||||
| Zinc finger | 154 – 204 | 51 | Phorbol-ester/DAG-type 1 | ||||||||||||||||||||||||
| Zinc finger | 271 – 321 | 51 | Phorbol-ester/DAG-type 2 | ||||||||||||||||||||||||
| Nucleotide binding | 582 – 590 | 9 | ATP By similarity | ||||||||||||||||||||||||
Sites | |||||||||||||||||||||||||||
| Active site | 699 | 1 | Proton acceptor By similarity | ||||||||||||||||||||||||
| Binding site | 605 | 1 | ATP By similarity | ||||||||||||||||||||||||
Amino acid modifications | |||||||||||||||||||||||||||
| Modified residue | 6 | 1 | Phosphoserine Ref.8 | ||||||||||||||||||||||||
| Modified residue | 27 | 1 | Phosphoserine Ref.8 Ref.9 Ref.10 Ref.11 | ||||||||||||||||||||||||
| Modified residue | 37 | 1 | Phosphoserine Ref.8 | ||||||||||||||||||||||||
| Modified residue | 41 | 1 | Phosphoserine Ref.8 Ref.9 Ref.10 Ref.11 | ||||||||||||||||||||||||
| Modified residue | 44 | 1 | Phosphoserine Ref.9 Ref.11 | ||||||||||||||||||||||||
| Modified residue | 213 | 1 | Phosphoserine Ref.8 Ref.10 | ||||||||||||||||||||||||
| Modified residue | 216 | 1 | Phosphoserine Ref.8 Ref.10 | ||||||||||||||||||||||||
| Modified residue | 364 | 1 | Phosphoserine Ref.6 Ref.8 Ref.9 Ref.10 | ||||||||||||||||||||||||
| Modified residue | 535 | 1 | Phosphothreonine Ref.8 Ref.10 | ||||||||||||||||||||||||
| Modified residue | 731 | 1 | Phosphoserine; by PKC | ||||||||||||||||||||||||
| Modified residue | 735 | 1 | Phosphoserine; by autocatalysis | ||||||||||||||||||||||||
Natural variations | |||||||||||||||||||||||||||
| Alternative sequence | 595 – 611 | 17 | HRKTG…IDKMR → QLQPFAYCTHYFKNWKM in isoform 2. | VSP_029405 | |||||||||||||||||||||||
| Alternative sequence | 612 – 890 | 279 | Missing in isoform 2. | VSP_029406 | |||||||||||||||||||||||
| Natural variant | 42 | 1 | N → D. Corresponds to variant rs11896614 [ dbSNP | Ensembl ]. | VAR_037147 | |||||||||||||||||||||||
| Natural variant | 128 | 1 | A → T. Ref.5 Corresponds to variant rs17852819 [ dbSNP | Ensembl ]. | VAR_037148 | |||||||||||||||||||||||
| Natural variant | 225 | 1 | P → S. Corresponds to variant rs34280934 [ dbSNP | Ensembl ]. | VAR_050561 | |||||||||||||||||||||||
| Natural variant | 445 | 1 | L → I. Corresponds to variant rs55912911 [ dbSNP | Ensembl ]. | VAR_061532 | |||||||||||||||||||||||
| Natural variant | 546 | 1 | Q → R. Ref.5 Corresponds to variant rs17856887 [ dbSNP | Ensembl ]. | VAR_037149 | |||||||||||||||||||||||
| Natural variant | 716 | 1 | V → M in a glioblastoma multiforme sample; somatic mutation. Ref.13 | VAR_042336 | |||||||||||||||||||||||
Experimental info | |||||||||||||||||||||||||||
| Mutagenesis | 156 | 1 | T → A: Slight loss in ability to bind DAG and phorbol-ester; when associated with F-158. Ref.7 | ||||||||||||||||||||||||
| Mutagenesis | 158 | 1 | Y → F: Slight loss in ability to bind DAG and phorbol-ester; when associated with A-156. Ref.7 | ||||||||||||||||||||||||
| Mutagenesis | 165 | 1 | P → G: No effect on ability to bind phorbol ester, loss of ability to bind DAG, reduced DAG-induced membrane translocation. Ref.7 | ||||||||||||||||||||||||
| Mutagenesis | 166 | 1 | T → A: Slight loss in ability to bind DAG and phorbol-ester. Ref.7 | ||||||||||||||||||||||||
| Mutagenesis | 170 | 1 | Y → F: Slight loss in ability to bind DAG and phorbol-ester. Ref.7 | ||||||||||||||||||||||||
| Mutagenesis | 282 | 1 | P → G: No effect on ability to bind phorbol ester, increase in ability to bind DAG. Ref.7 | ||||||||||||||||||||||||
| Mutagenesis | 284 | 1 | I → V: Slight increase in ability to bind DAG, no effect on phorbol-ester binding. | ||||||||||||||||||||||||
| Mutagenesis | 293 | 1 | K → W: Increased ability to bind DAG, no effect on phorbol-ester binding. Ref.7 | ||||||||||||||||||||||||
Secondary structure | |||||||||||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||||||||||
| Beta strand | 417 – 429 | 13 | |||||||||||||||||||||||||
| Beta strand | 434 – 443 | 10 | |||||||||||||||||||||||||
| Beta strand | 445 – 449 | 5 | |||||||||||||||||||||||||
| Turn | 462 – 464 | 3 | |||||||||||||||||||||||||
| Beta strand | 477 – 479 | 3 | |||||||||||||||||||||||||
| Beta strand | 485 – 489 | 5 | |||||||||||||||||||||||||
| Beta strand | 494 – 497 | 4 | |||||||||||||||||||||||||
| Turn | 508 – 514 | 7 | |||||||||||||||||||||||||
| Helix | 517 – 532 | 16 | |||||||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "PKCnu, a new member of the protein kinase C family, composes a fourth subfamily with PKCmu." Hayashi A., Seki N., Hattori A., Kozuma S., Saito T. Biochim. Biophys. Acta 1450:99-106(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). Tissue: Embryo. |
| [2] | "Generation and annotation of the DNA sequences of human chromosomes 2 and 4." Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L., Du H. Wilson R.K.Nature 434:724-731(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [3] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), VARIANTS THR-128 AND ARG-546. Tissue: Testis. |
| [6] | "A probability-based approach for high-throughput protein phosphorylation analysis and site localization." Beausoleil S.A., Villen J., Gerber S.A., Rush J., Gygi S.P. Nat. Biotechnol. 24:1285-1292(2006) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-364, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [7] | "Selective binding of phorbol esters and diacylglycerol by individual C1 domains of the PKD family." Chen J., Deng F., Li J., Wang Q.J. Biochem. J. 411:333-342(2008) [PubMed] [Europe PMC] [Abstract] Cited for: ENZYME REGULATION, SUBCELLULAR LOCATION, PHORBOL-ESTER BINDING, MUTAGENESIS OF THR-156; TYR-158; PRO-165; THR-166; TYR-170; PRO-282 AND LYS-293. |
| [8] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-6; SER-27; SER-37; SER-41; SER-213; SER-216; SER-364 AND THR-535, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [9] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-27; SER-41; SER-44 AND SER-364, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [10] | "Large-scale proteomics analysis of the human kinome." Oppermann F.S., Gnad F., Olsen J.V., Hornberger R., Greff Z., Keri G., Mann M., Daub H. Mol. Cell. Proteomics 8:1751-1764(2009) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-27; SER-41; SER-213; SER-216; SER-364 AND THR-535, MASS SPECTROMETRY. |
| [11] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-27; SER-41 AND SER-44, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [12] | "Solution structure of the PH domain of protein kinase C, nu type from human." RIKEN structural genomics initiative (RSGI) Submitted (JAN-2007) to the PDB data bank Cited for: STRUCTURE BY NMR OF 414-532. |
| [13] | "Patterns of somatic mutation in human cancer genomes." Greenman C., Stephens P., Smith R., Dalgliesh G.L., Hunter C., Bignell G., Davies H., Teague J., Butler A., Stevens C., Edkins S., O'Meara S., Vastrik I., Schmidt E.E., Avis T., Barthorpe S., Bhamra G., Buck G. Stratton M.R.Nature 446:153-158(2007) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT [LARGE SCALE ANALYSIS] MET-716. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | AB015982 mRNA. Translation: BAA36514.1. AC007390 Genomic DNA. Translation: AAY14817.1. CH471053 Genomic DNA. Translation: EAX00398.1. CH471053 Genomic DNA. Translation: EAX00399.1. BC030706 mRNA. Translation: AAH30706.1. | ||||||||||||
| IPI | IPI00015538. IPI00871931. | ||||||||||||
| RefSeq | NP_005804.1. NM_005813.3. | ||||||||||||
| UniGene | Hs.660757. Hs.716034. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||
| ProteinModelPortal | O94806. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| IntAct | O94806. 8 interactions. | ||||||||||||
| STRING | 9606.ENSP00000234179. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | O94806. | ||||||||||||
Proteomic databases | |||||||||||||
| PaxDb | O94806. | ||||||||||||
| PRIDE | O94806. | ||||||||||||
Protocols and materials databases | |||||||||||||
| DNASU | 23683. | ||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000234179; ENSP00000234179; ENSG00000115825. ENST00000379066; ENSP00000368356; ENSG00000115825. | ||||||||||||
| GeneID | 23683. | ||||||||||||
| KEGG | hsa:23683. | ||||||||||||
| UCSC | uc002rqd.3. human. uc002rqf.1. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 23683. | ||||||||||||
| GeneCards | GC02M037477. | ||||||||||||
| H-InvDB | HIX0030377. | ||||||||||||
| HGNC | HGNC:9408. PRKD3. | ||||||||||||
| HPA | HPA029529. | ||||||||||||
| MIM | 607077. gene. | ||||||||||||
| neXtProt | NX_O94806. | ||||||||||||
| PharmGKB | PA33772. | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | COG0515. | ||||||||||||
| HOGENOM | HOG000015135. | ||||||||||||
| HOVERGEN | HBG003564. | ||||||||||||
| InParanoid | O94806. | ||||||||||||
| KO | K06070. | ||||||||||||
| OMA | ISSPQDF. | ||||||||||||
| OrthoDB | EOG4548XW. | ||||||||||||
| PhylomeDB | O94806. | ||||||||||||
Enzyme and pathway databases | |||||||||||||
| BRENDA | 2.7.11.13. 2681. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | O94806. | ||||||||||||
| Bgee | O94806. | ||||||||||||
| CleanEx | HS_PRKD3. | ||||||||||||
| Genevestigator | O94806. | ||||||||||||
| GermOnline | ENSG00000115825. Homo sapiens. | ||||||||||||
Family and domain databases | |||||||||||||
| Gene3D | 2.30.29.30. 1 hit. | ||||||||||||
| InterPro | IPR020454. DAG/PE-bd. IPR011009. Kinase-like_dom. IPR011993. PH_like_dom. IPR001849. Pleckstrin_homology. IPR002219. Prot_Kinase_C-like_PE/DAG-bd. IPR000719. Prot_kinase_cat_dom. IPR017441. Protein_kinase_ATP_BS. IPR015727. Protein_Kinase_C_mu-related. IPR002290. Ser/Thr_dual-sp_kinase_dom. IPR008271. Ser/Thr_kinase_AS. [Graphical view] | ||||||||||||
| PANTHER | PTHR22968. PTHR22968. 1 hit. | ||||||||||||
| Pfam | PF00130. C1_1. 2 hits. PF00169. PH. 1 hit. PF00069. Pkinase. 1 hit. [Graphical view] | ||||||||||||
| PIRSF | PIRSF000552. PKC_mu_nu_D2. 1 hit. | ||||||||||||
| PRINTS | PR00008. DAGPEDOMAIN. | ||||||||||||
| SMART | SM00109. C1. 2 hits. SM00233. PH. 1 hit. SM00220. S_TKc. 1 hit. [Graphical view] | ||||||||||||
| SUPFAM | SSF56112. Kinase_like. 1 hit. | ||||||||||||
| PROSITE | PS50003. PH_DOMAIN. 1 hit. PS00107. PROTEIN_KINASE_ATP. 1 hit. PS50011. PROTEIN_KINASE_DOM. 1 hit. PS00108. PROTEIN_KINASE_ST. 1 hit. PS00479. ZF_DAG_PE_1. 2 hits. PS50081. ZF_DAG_PE_2. 2 hits. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| BindingDB | O94806. | ||||||||||||
| ChEMBL | CHEMBL2595. | ||||||||||||
| EvolutionaryTrace | O94806. | ||||||||||||
| GenomeRNAi | 23683. | ||||||||||||
| NextBio | 46561. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | KPCD3_HUMAN | ||||||||
| Accession | Primary (citable) accession number: O94806 Secondary accession number(s): D6W587, Q53TR7, Q8NEL8 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human and mouse protein kinases Human and mouse protein kinases: classification and index |
| Human chromosome 2 Human chromosome 2: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
