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O94622 (YBKD_SCHPO) Reviewed, UniProtKB/Swiss-Prot

Last modified December 14, 2011. Version 59. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Uncharacterized alpha-1,2-galactosyltransferase C1289.13c
EC=2.4.1.-
Gene names
ORF Names:SPBC1289.13c
OrganismSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifier284812 [NCBI]
Taxonomic lineageEukaryota › Fungi › Dikarya › Ascomycota › Taphrinomycotina › Schizosaccharomycetes › Schizosaccharomycetales › Schizosaccharomycetaceae › Schizosaccharomyces

Protein attributes

Sequence length375 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 375375Uncharacterized alpha-1,2-galactosyltransferase C1289.13c
PRO_0000339340

Regions

Topological domain1 – 22Cytoplasmic Potential
Transmembrane3 – 2321Helical; Signal-anchor for type II membrane protein; Potential
Topological domain24 – 375352Lumenal Potential
Compositional bias52 – 8837Thr-rich

Sequences

Sequence LengthMass (Da)Tools
O94622 [UniParc].

Last modified May 1, 1999. Version 1.
Checksum: AA0A2A35E2353275

FASTA37543,118
        10         20         30         40         50         60 
MRWYSYVIPA VILSIIAISG VWWNATLGTR LDQKVQLFLN EHSSILNAVY ETTTIVYTEP 

        70         80         90        100        110        120 
LHTSVSETIT STSFVTETTT VTPTVTATAQ ELSTLNPHPE NSKIVLLMGS NAQNDPSSPL 

       130        140        150        160        170        180 
NPYIRTIIKN RRDYAERHGF KFEFLDLDEY KPSIGDKPAP WAKIPMIKNV IRKYPDAEWV 

       190        200        210        220        230        240 
WWLDHDALIM NRDLNLVDHI LKHEKLNSLL LRDTEYFSGF GIDSEGFRTP KNQDPDDIHF 

       250        260        270        280        290        300 
IIAQDFNGIN AGSFLIRNSE VGTWMLDFWN EPLYKEHNGV FVEQQALSHM IYSHPIVHKH 

       310        320        330        340        350        360 
VGLVTLRSIN AYDSSDPAWG YEDGDLCVHF AGCFVFQTCA QNFEKYGKII TEKQGHDWFD 

       370 
PSEKEYIEQR LFPQP

« Hide

References

[1]"The genome sequence of Schizosaccharomyces pombe."
Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M. expand/collapse author list , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
Nature 415:871-880(2002) [PubMed: 11859360] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 972 / ATCC 24843.
[2]"ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe."
Matsuyama A., Arai R., Yashiroda Y., Shirai A., Kamata A., Sekido S., Kobayashi Y., Hashimoto A., Hamamoto M., Hiraoka Y., Horinouchi S., Yoshida M.
Nat. Biotechnol. 24:841-847(2006) [PubMed: 16823372] [Abstract]
Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CU329671 Genomic DNA. Translation: CAB38693.1.
PIRT39364.
RefSeqNP_596837.1. NM_001023858.1.

3D structure databases

ProteinModelPortalO94622.
ModBaseSearch...

Protein-protein interaction databases

STRINGO94622.

Protein family/group databases

CAZyGT34. Glycosyltransferase Family 34.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblFungiSPBC1289.13c.1; SPBC1289.13c.1:pep; SPBC1289.13c.
GeneID2540001.
KEGGspo:SPBC1289.13c.
NMPDRfig|4896.1.peg.2703.

Organism-specific databases

GeneDB_SpombeSPBC1289.13c.

Phylogenomic databases

eggNOGfuNOG08674.
GeneTreeEFGT00050000004280.
HOGENOMHBG208363.
OrthoDBEOG46T69N.

Gene expression databases

ArrayExpressO94622.

Family and domain databases

InterProIPR008630. Glyco_trans_34.
[Graphical view]
KOK00754.
PfamPF05637. Glyco_transf_34. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameYBKD_SCHPO
AccessionPrimary (citable) accession number: O94622
Entry history
Integrated into UniProtKB/Swiss-Prot: June 10, 2008
Last sequence update: May 1, 1999
Last modified: December 14, 2011
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents