O94506 (RSM1_SCHPO) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
mRNA export factor rsm1

Gene names

Name:	rsm1
ORF Names:	SPCC1753.05

Organism

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) [Reference proteome]

Taxonomic identifier

284812 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Fungi › Dikarya › Ascomycota › Taphrinomycotina › Schizosaccharomycetes › Schizosaccharomycetales › Schizosaccharomycetaceae › Schizosaccharomyces › Schizosaccharomyces pombe

Protein attributes

Sequence length	296 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Function	Involved in the export of mRNA from the nucleus to the cytoplasm. Ref.2
Subcellular location	Cytoplasm. Nucleus Ref.3.
Sequence similarities	Contains 1 C3HC-type zinc finger.

Ontologies

Keywords
Biological process	Transport mRNA transport
Cellular component	Cytoplasm Nucleus
Domain	Zinc-finger
Ligand	Metal-binding RNA-binding Zinc
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	mRNA export from nucleus Inferred from genetic interaction Ref.2. Source: PomBase
Cellular_component	cytosol Inferred from direct assay Ref.3. Source: PomBase nucleus Inferred from direct assay Ref.3. Source: PomBase
Molecular_function	RNA binding Inferred from electronic annotation. Source: UniProtKB-KW zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 296	296	mRNA export factor rsm1		PRO_0000290653
Regions
	Zinc finger	40 – 174	135	C3HC-type

Sequences

	Sequence		Length	Mass (Da)
	O94506 [UniParc]. Last modified May 1, 1999. Version 1. Checksum: 4E921F1B37DE2211	FASTA	296	34,650
	10 20 30 40 50 60 MSFPTDMETN EILDQLDKID ERNEDILLKS LKASKCTYKP WSREEFLRRL LTYRSRWAYV 70 80 90 100 110 120 NDPQIGEINC CLNGWLCESN NILVCDVCRN KINLTALQQV DAENDSLNEL PEKTKERLEV 130 140 150 160 170 180 SLKEEHQDNC LWRLHKFPPD IYHLSVSAEL VQVGRRFNSL STRLVSTHLP EEMTLKRLEK 190 200 210 220 230 240 VANKIRVDWE KEDAAVLLGI ALTGWSEQVP GRLYVCNYCH RRLGVWNLQS EGQDFDVLEE 250 260 270 280 290 HKKSCPWVIP QPFTDLLGWQ QIFELLCKES IFQSTTKTMD VSQYTDYTFS LLQGLR

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The genome sequence of Schizosaccharomyces pombe." Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M. , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P. Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 972 / ATCC 24843.
[2]	"Schizosaccharomyces pombe rsm1 genetically interacts with spmex67, which is involved in mRNA export." Yoon J.H. J. Microbiol. 42:32-36(2004) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION.
[3]	"ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe." Matsuyama A., Arai R., Yashiroda Y., Shirai A., Kamata A., Sekido S., Kobayashi Y., Hashimoto A., Hamamoto M., Hiraoka Y., Horinouchi S., Yoshida M. Nat. Biotechnol. 24:841-847(2006) [PubMed] [Europe PMC] [Abstract] Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CU329672 Genomic DNA. Translation: CAA22779.1.
PIR	T41128.
RefSeq	NP_588231.1. NM_001023221.2.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	4896.SPCC1753.05-1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblFungi	SPCC1753.05.1; SPCC1753.05.1:pep; SPCC1753.05.
GeneID	2538984.
KEGG	spo:SPCC1753.05.
Organism-specific databases
PomBase	SPCC1753.05.
Phylogenomic databases
eggNOG	NOG246473.
OrthoDB	EOG42FWSH.
Family and domain databases
InterPro	IPR013909. NIPA/Rsm1. IPR012935. Znf_C3HC-like. [Graphical view]
Pfam	PF08600. Rsm1. 1 hit. PF07967. zf-C3HC. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	20800159.

Entry information

Entry name

RSM1_SCHPO

Accession

Primary (citable) accession number: O94506

Entry history

Integrated into UniProtKB/Swiss-Prot:	June 12, 2007
Last sequence update:	May 1, 1999
Last modified:	May 1, 2013
This is version 61 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Fungal Protein Annotation Program