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O94506 (RSM1_SCHPO) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 64. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
mRNA export factor rsm1
Gene names
Name:rsm1
ORF Names:SPCC1753.05
OrganismSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) [Reference proteome]
Taxonomic identifier284812 [NCBI]
Taxonomic lineageEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces

Protein attributes

Sequence length296 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Function

Involved in the export of mRNA from the nucleus to the cytoplasm. Ref.2

Subcellular location

Cytoplasm. Nucleus Ref.3.

Sequence similarities

Contains 1 C3HC-type zinc finger.

Ontologies

Keywords
   Biological processmRNA transport
Transport
   Cellular componentCytoplasm
Nucleus
   DomainZinc-finger
   LigandMetal-binding
RNA-binding
Zinc
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processmRNA export from nucleus

Inferred from genetic interaction Ref.2. Source: PomBase

   Cellular_componentcytosol

Inferred from direct assay Ref.3. Source: PomBase

nucleus

Inferred from direct assay Ref.3. Source: PomBase

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

zinc ion binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 296296mRNA export factor rsm1
PRO_0000290653

Regions

Zinc finger40 – 174135C3HC-type

Sequences

Sequence LengthMass (Da)Tools
O94506 [UniParc].

Last modified May 1, 1999. Version 1.
Checksum: 4E921F1B37DE2211

FASTA29634,650
        10         20         30         40         50         60 
MSFPTDMETN EILDQLDKID ERNEDILLKS LKASKCTYKP WSREEFLRRL LTYRSRWAYV 

        70         80         90        100        110        120 
NDPQIGEINC CLNGWLCESN NILVCDVCRN KINLTALQQV DAENDSLNEL PEKTKERLEV 

       130        140        150        160        170        180 
SLKEEHQDNC LWRLHKFPPD IYHLSVSAEL VQVGRRFNSL STRLVSTHLP EEMTLKRLEK 

       190        200        210        220        230        240 
VANKIRVDWE KEDAAVLLGI ALTGWSEQVP GRLYVCNYCH RRLGVWNLQS EGQDFDVLEE 

       250        260        270        280        290 
HKKSCPWVIP QPFTDLLGWQ QIFELLCKES IFQSTTKTMD VSQYTDYTFS LLQGLR 

« Hide

References

« Hide 'large scale' references
[1]"The genome sequence of Schizosaccharomyces pombe."
Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M. expand/collapse author list , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 972 / ATCC 24843.
[2]"Schizosaccharomyces pombe rsm1 genetically interacts with spmex67, which is involved in mRNA export."
Yoon J.H.
J. Microbiol. 42:32-36(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: FUNCTION.
[3]"ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe."
Matsuyama A., Arai R., Yashiroda Y., Shirai A., Kamata A., Sekido S., Kobayashi Y., Hashimoto A., Hamamoto M., Hiraoka Y., Horinouchi S., Yoshida M.
Nat. Biotechnol. 24:841-847(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CU329672 Genomic DNA. Translation: CAA22779.1.
PIRT41128.
RefSeqNP_588231.1. NM_001023221.2.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

BioGrid275558. 1 interaction.
MINTMINT-4684763.
STRING4896.SPCC1753.05-1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblFungiSPCC1753.05.1; SPCC1753.05.1:pep; SPCC1753.05.
GeneID2538984.
KEGGspo:SPCC1753.05.

Organism-specific databases

PomBaseSPCC1753.05.

Phylogenomic databases

eggNOGNOG246473.
OrthoDBEOG73RBN3.

Family and domain databases

InterProIPR013909. NIPA/Rsm1.
IPR012935. Znf_C3HC-like.
[Graphical view]
PfamPF08600. Rsm1. 1 hit.
PF07967. zf-C3HC. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio20800159.

Entry information

Entry nameRSM1_SCHPO
AccessionPrimary (citable) accession number: O94506
Entry history
Integrated into UniProtKB/Swiss-Prot: June 12, 2007
Last sequence update: May 1, 1999
Last modified: February 19, 2014
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Schizosaccharomyces pombe

Schizosaccharomyces pombe: entries and gene names