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Protein

mRNA export factor rsm1

Gene

rsm1

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein predictedi

Functioni

Involved in the export of mRNA from the nucleus to the cytoplasm.1 Publication

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri40 – 174135C3HC-typeAdd
BLAST

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-KW
  2. zinc ion binding Source: InterPro

GO - Biological processi

  1. mRNA export from nucleus Source: PomBase
Complete GO annotation...

Keywords - Biological processi

mRNA transport, Transport

Keywords - Ligandi

Metal-binding, RNA-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
mRNA export factor rsm1
Gene namesi
Name:rsm1
ORF Names:SPCC1753.05
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
ProteomesiUP000002485: Chromosome III

Organism-specific databases

PomBaseiSPCC1753.05.

Subcellular locationi

Cytoplasm 1 Publication. Nucleus 1 Publication

GO - Cellular componenti

  1. cytosol Source: PomBase
  2. nucleus Source: PomBase
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 296296mRNA export factor rsm1PRO_0000290653Add
BLAST

Proteomic databases

MaxQBiO94506.

Interactioni

Protein-protein interaction databases

BioGridi275558. 3 interactions.
MINTiMINT-4684763.
STRINGi4896.SPCC1753.05-1.

Family & Domainsi

Sequence similaritiesi

Contains 1 C3HC-type zinc finger.Curated

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri40 – 174135C3HC-typeAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiNOG246473.
InParanoidiO94506.
OrthoDBiEOG73RBN3.
PhylomeDBiO94506.

Family and domain databases

InterProiIPR013909. NIPA/Rsm1.
IPR012935. Znf_C3HC-like.
[Graphical view]
PfamiPF08600. Rsm1. 1 hit.
PF07967. zf-C3HC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O94506-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSFPTDMETN EILDQLDKID ERNEDILLKS LKASKCTYKP WSREEFLRRL
60 70 80 90 100
LTYRSRWAYV NDPQIGEINC CLNGWLCESN NILVCDVCRN KINLTALQQV
110 120 130 140 150
DAENDSLNEL PEKTKERLEV SLKEEHQDNC LWRLHKFPPD IYHLSVSAEL
160 170 180 190 200
VQVGRRFNSL STRLVSTHLP EEMTLKRLEK VANKIRVDWE KEDAAVLLGI
210 220 230 240 250
ALTGWSEQVP GRLYVCNYCH RRLGVWNLQS EGQDFDVLEE HKKSCPWVIP
260 270 280 290
QPFTDLLGWQ QIFELLCKES IFQSTTKTMD VSQYTDYTFS LLQGLR
Length:296
Mass (Da):34,650
Last modified:May 1, 1999 - v1
Checksum:i4E921F1B37DE2211
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329672 Genomic DNA. Translation: CAA22779.1.
PIRiT41128.
RefSeqiNP_588231.1. NM_001023221.2.

Genome annotation databases

EnsemblFungiiSPCC1753.05.1; SPCC1753.05.1:pep; SPCC1753.05.
GeneIDi2538984.
KEGGispo:SPCC1753.05.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329672 Genomic DNA. Translation: CAA22779.1.
PIRiT41128.
RefSeqiNP_588231.1. NM_001023221.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi275558. 3 interactions.
MINTiMINT-4684763.
STRINGi4896.SPCC1753.05-1.

Proteomic databases

MaxQBiO94506.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPCC1753.05.1; SPCC1753.05.1:pep; SPCC1753.05.
GeneIDi2538984.
KEGGispo:SPCC1753.05.

Organism-specific databases

PomBaseiSPCC1753.05.

Phylogenomic databases

eggNOGiNOG246473.
InParanoidiO94506.
OrthoDBiEOG73RBN3.
PhylomeDBiO94506.

Miscellaneous databases

NextBioi20800159.

Family and domain databases

InterProiIPR013909. NIPA/Rsm1.
IPR012935. Znf_C3HC-like.
[Graphical view]
PfamiPF08600. Rsm1. 1 hit.
PF07967. zf-C3HC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The genome sequence of Schizosaccharomyces pombe."
    Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
    , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
    Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 972 / ATCC 24843.
  2. "Schizosaccharomyces pombe rsm1 genetically interacts with spmex67, which is involved in mRNA export."
    Yoon J.H.
    J. Microbiol. 42:32-36(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION.
  3. "ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe."
    Matsuyama A., Arai R., Yashiroda Y., Shirai A., Kamata A., Sekido S., Kobayashi Y., Hashimoto A., Hamamoto M., Hiraoka Y., Horinouchi S., Yoshida M.
    Nat. Biotechnol. 24:841-847(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiRSM1_SCHPO
AccessioniPrimary (citable) accession number: O94506
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 12, 2007
Last sequence update: May 1, 1999
Last modified: January 7, 2015
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.