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O94506

- RSM1_SCHPO

UniProt

O94506 - RSM1_SCHPO

Protein

mRNA export factor rsm1

Gene

rsm1

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed - Annotation score: 3 out of 5- Protein predictedi
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    • History
      Entry version 67 (01 Oct 2014)
      Sequence version 1 (01 May 1999)
      Previous versions | rss
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    Functioni

    Involved in the export of mRNA from the nucleus to the cytoplasm.1 Publication

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri40 – 174135C3HC-typeAdd
    BLAST

    GO - Molecular functioni

    1. RNA binding Source: UniProtKB-KW
    2. zinc ion binding Source: InterPro

    GO - Biological processi

    1. mRNA export from nucleus Source: PomBase

    Keywords - Biological processi

    mRNA transport, Transport

    Keywords - Ligandi

    Metal-binding, RNA-binding, Zinc

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    mRNA export factor rsm1
    Gene namesi
    Name:rsm1
    ORF Names:SPCC1753.05
    OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
    Taxonomic identifieri284812 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
    ProteomesiUP000002485: Chromosome III

    Organism-specific databases

    PomBaseiSPCC1753.05.

    Subcellular locationi

    Cytoplasm 1 Publication. Nucleus 1 Publication

    GO - Cellular componenti

    1. cytosol Source: PomBase
    2. nucleus Source: PomBase

    Keywords - Cellular componenti

    Cytoplasm, Nucleus

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 296296mRNA export factor rsm1PRO_0000290653Add
    BLAST

    Proteomic databases

    MaxQBiO94506.

    Interactioni

    Protein-protein interaction databases

    BioGridi275558. 1 interaction.
    MINTiMINT-4684763.
    STRINGi4896.SPCC1753.05-1.

    Family & Domainsi

    Sequence similaritiesi

    Contains 1 C3HC-type zinc finger.Curated

    Zinc finger

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri40 – 174135C3HC-typeAdd
    BLAST

    Keywords - Domaini

    Zinc-finger

    Phylogenomic databases

    eggNOGiNOG246473.
    OrthoDBiEOG73RBN3.
    PhylomeDBiO94506.

    Family and domain databases

    InterProiIPR013909. NIPA/Rsm1.
    IPR012935. Znf_C3HC-like.
    [Graphical view]
    PfamiPF08600. Rsm1. 1 hit.
    PF07967. zf-C3HC. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    O94506-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSFPTDMETN EILDQLDKID ERNEDILLKS LKASKCTYKP WSREEFLRRL    50
    LTYRSRWAYV NDPQIGEINC CLNGWLCESN NILVCDVCRN KINLTALQQV 100
    DAENDSLNEL PEKTKERLEV SLKEEHQDNC LWRLHKFPPD IYHLSVSAEL 150
    VQVGRRFNSL STRLVSTHLP EEMTLKRLEK VANKIRVDWE KEDAAVLLGI 200
    ALTGWSEQVP GRLYVCNYCH RRLGVWNLQS EGQDFDVLEE HKKSCPWVIP 250
    QPFTDLLGWQ QIFELLCKES IFQSTTKTMD VSQYTDYTFS LLQGLR 296
    Length:296
    Mass (Da):34,650
    Last modified:May 1, 1999 - v1
    Checksum:i4E921F1B37DE2211
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CU329672 Genomic DNA. Translation: CAA22779.1.
    PIRiT41128.
    RefSeqiNP_588231.1. NM_001023221.2.

    Genome annotation databases

    EnsemblFungiiSPCC1753.05.1; SPCC1753.05.1:pep; SPCC1753.05.
    GeneIDi2538984.
    KEGGispo:SPCC1753.05.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CU329672 Genomic DNA. Translation: CAA22779.1 .
    PIRi T41128.
    RefSeqi NP_588231.1. NM_001023221.2.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 275558. 1 interaction.
    MINTi MINT-4684763.
    STRINGi 4896.SPCC1753.05-1.

    Proteomic databases

    MaxQBi O94506.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblFungii SPCC1753.05.1 ; SPCC1753.05.1:pep ; SPCC1753.05 .
    GeneIDi 2538984.
    KEGGi spo:SPCC1753.05.

    Organism-specific databases

    PomBasei SPCC1753.05.

    Phylogenomic databases

    eggNOGi NOG246473.
    OrthoDBi EOG73RBN3.
    PhylomeDBi O94506.

    Miscellaneous databases

    NextBioi 20800159.

    Family and domain databases

    InterProi IPR013909. NIPA/Rsm1.
    IPR012935. Znf_C3HC-like.
    [Graphical view ]
    Pfami PF08600. Rsm1. 1 hit.
    PF07967. zf-C3HC. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome sequence of Schizosaccharomyces pombe."
      Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
      , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
      Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 972 / ATCC 24843.
    2. "Schizosaccharomyces pombe rsm1 genetically interacts with spmex67, which is involved in mRNA export."
      Yoon J.H.
      J. Microbiol. 42:32-36(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: FUNCTION.
    3. "ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe."
      Matsuyama A., Arai R., Yashiroda Y., Shirai A., Kamata A., Sekido S., Kobayashi Y., Hashimoto A., Hamamoto M., Hiraoka Y., Horinouchi S., Yoshida M.
      Nat. Biotechnol. 24:841-847(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].

    Entry informationi

    Entry nameiRSM1_SCHPO
    AccessioniPrimary (citable) accession number: O94506
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: June 12, 2007
    Last sequence update: May 1, 1999
    Last modified: October 1, 2014
    This is version 67 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programFungal Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Schizosaccharomyces pombe
      Schizosaccharomyces pombe: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3