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Protein

Uncharacterized mitochondrial carrier C12D12.05c

Gene

SPBC12D12.05c

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized mitochondrial carrier C12D12.05c
Gene namesi
ORF Names:SPBC12D12.05c
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome II

Organism-specific databases

EuPathDBiFungiDB:SPBC12D12.05c.
PomBaseiSPBC12D12.05c.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei130 – 15122Helical; Name=1Sequence analysisAdd
BLAST
Transmembranei193 – 21321Helical; Name=2Sequence analysisAdd
BLAST
Transmembranei229 – 24921Helical; Name=3Sequence analysisAdd
BLAST
Transmembranei290 – 31021Helical; Name=4Sequence analysisAdd
BLAST
Transmembranei336 – 35621Helical; Name=5Sequence analysisAdd
BLAST
Transmembranei394 – 41522Helical; Name=6Sequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • mitochondrial inner membrane Source: UniProtKB-SubCell
  • mitochondrion Source: PomBase
Complete GO annotation...

Keywords - Cellular componenti

Membrane, Mitochondrion, Mitochondrion inner membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 426426Uncharacterized mitochondrial carrier C12D12.05cPRO_0000310791Add
BLAST

Proteomic databases

MaxQBiO94502.

Interactioni

Protein-protein interaction databases

MINTiMINT-4684724.

Structurei

3D structure databases

ProteinModelPortaliO94502.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati125 – 21692Solcar 1Add
BLAST
Repeati226 – 31590Solcar 2Add
BLAST
Repeati334 – 42289Solcar 3Add
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi65 – 10844His-richAdd
BLAST

Sequence similaritiesi

Contains 3 Solcar repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Transmembrane, Transmembrane helix

Phylogenomic databases

InParanoidiO94502.
KOiK14684.
OMAiRTETMAN.
OrthoDBiEOG783N3Z.
PhylomeDBiO94502.

Family and domain databases

Gene3Di1.50.40.10. 1 hit.
InterProiIPR002067. Mit_carrier.
IPR018108. Mitochondrial_sb/sol_carrier.
IPR023395. Mt_carrier_dom.
[Graphical view]
PfamiPF00153. Mito_carr. 3 hits.
[Graphical view]
PRINTSiPR00926. MITOCARRIER.
SUPFAMiSSF103506. SSF103506. 1 hit.
PROSITEiPS50920. SOLCAR. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O94502-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPTELSDITI QSVLPCDYSL FKNNLRVSRL PESRFVFSPK EEINCQSLLQ
60 70 80 90 100
GPELKTALDN LNFIHKQKFE HQFRHGYWKL HPHPHHQHDS IIPASWIHDT
110 120 130 140 150
PHMKLVFHRL QNLPDGDLLL ENDPKNNVGY FISGGIAGIV SRTCTAPLDR
160 170 180 190 200
LKVMLISDTG SKPSPKYPFA TLLHTTKVLW NRNGIRSFFV GNGINVLKVM
210 220 230 240 250
PESSIKFGTY EAMKRVLGIS SSSENHSPLY SYLAGGMAGS VAQMFIYPVD
260 270 280 290 300
TLKFRIQCSD LSRGQHGKSI ILSNAKELYK SVGIRGYYRG VLVGILGMFP
310 320 330 340 350
YSATDLGTFE GLKRTWIGIL ASRDNVDPQD VKLPNGLVMA FGALSGSTGA
360 370 380 390 400
TIVFPLNVIR TRLQTQGTSA HPATYDGFID CFYKTTKNEG FRGLYKGLSP
410 420
NLLKVAPSVA ISYLVYENCK KWLGLE
Length:426
Mass (Da):47,514
Last modified:May 1, 2000 - v2
Checksum:i2533D8B0F1B2CF78
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAA22679.2.
PIRiT39385.
RefSeqiNP_595952.1. NM_001021861.2.

Genome annotation databases

EnsemblFungiiSPBC12D12.05c.1; SPBC12D12.05c.1:pep; SPBC12D12.05c.
GeneIDi2539713.
KEGGispo:SPBC12D12.05c.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAA22679.2.
PIRiT39385.
RefSeqiNP_595952.1. NM_001021861.2.

3D structure databases

ProteinModelPortaliO94502.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

MINTiMINT-4684724.

Proteomic databases

MaxQBiO94502.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPBC12D12.05c.1; SPBC12D12.05c.1:pep; SPBC12D12.05c.
GeneIDi2539713.
KEGGispo:SPBC12D12.05c.

Organism-specific databases

EuPathDBiFungiDB:SPBC12D12.05c.
PomBaseiSPBC12D12.05c.

Phylogenomic databases

InParanoidiO94502.
KOiK14684.
OMAiRTETMAN.
OrthoDBiEOG783N3Z.
PhylomeDBiO94502.

Miscellaneous databases

PROiO94502.

Family and domain databases

Gene3Di1.50.40.10. 1 hit.
InterProiIPR002067. Mit_carrier.
IPR018108. Mitochondrial_sb/sol_carrier.
IPR023395. Mt_carrier_dom.
[Graphical view]
PfamiPF00153. Mito_carr. 3 hits.
[Graphical view]
PRINTSiPR00926. MITOCARRIER.
SUPFAMiSSF103506. SSF103506. 1 hit.
PROSITEiPS50920. SOLCAR. 3 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of Schizosaccharomyces pombe."
    Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
    , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
    Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 972 / ATCC 24843.
  2. "ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe."
    Matsuyama A., Arai R., Yashiroda Y., Shirai A., Kamata A., Sekido S., Kobayashi Y., Hashimoto A., Hamamoto M., Hiraoka Y., Horinouchi S., Yoshida M.
    Nat. Biotechnol. 24:841-847(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiYBT5_SCHPO
AccessioniPrimary (citable) accession number: O94502
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 13, 2007
Last sequence update: May 1, 2000
Last modified: June 8, 2016
This is version 91 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.