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Protein

Uncharacterized RNA-binding protein C660.15

Gene

SPBC660.15

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRNA-binding

Enzyme and pathway databases

ReactomeiR-SPO-450408 AUF1 (hnRNP D0) binds and destabilizes mRNA

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized RNA-binding protein C660.15
Gene namesi
ORF Names:SPBC660.15
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome II

Organism-specific databases

EuPathDBiFungiDB:SPBC660.15
PomBaseiSPBC660.15

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003108121 – 474Uncharacterized RNA-binding protein C660.15Add BLAST474

Proteomic databases

MaxQBiO94432
PaxDbiO94432
PRIDEiO94432

PTM databases

iPTMnetiO94432

Interactioni

Protein-protein interaction databases

BioGridi277665, 5 interactors
STRINGi4896.SPBC660.15.1

Structurei

3D structure databases

ProteinModelPortaliO94432
SMRiO94432
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini163 – 245RRM 1PROSITE-ProRule annotationAdd BLAST83
Domaini247 – 324RRM 2PROSITE-ProRule annotationAdd BLAST78

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi401 – 406Poly-Gln6

Keywords - Domaini

Repeat

Phylogenomic databases

InParanoidiO94432
KOiK14411
OrthoDBiEOG092C3SCB
PhylomeDBiO94432

Family and domain databases

CDDicd12577 RRM1_Hrp1p, 1 hit
cd12330 RRM2_Hrp1p, 1 hit
Gene3Di3.30.70.330, 2 hits
InterProiView protein in InterPro
IPR034156 Hrp1_RRM1
IPR034155 Hrp1_RRM2
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
PfamiView protein in Pfam
PF00076 RRM_1, 2 hits
SMARTiView protein in SMART
SM00360 RRM, 2 hits
SUPFAMiSSF54928 SSF54928, 2 hits
PROSITEiView protein in PROSITE
PS50102 RRM, 2 hits

Sequencei

Sequence statusi: Complete.

O94432-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGGSDFEDDE LFKDLYGEEN EKKVESASGN QETSNVTPTK ENEGYEELEK
60 70 80 90 100
SGEAGAERTK ENPFREEPGA DFDRSGSDQQ YSAEAEANQE DDLNETSQQA
110 120 130 140 150
PDPSSYDIRG QALSSATWDN AEDGENSKND NYNENQSALT GSGAMESNED
160 170 180 190 200
NAEETSPFNR EDGKMFIGGL NWETTDDSLR DYFEQFGEVL DCTVMRDSTT
210 220 230 240 250
GRSRGFGFLT FKNPKCVNEV MSKEHHLDGK IIDPKRAIPR EEQEKTAKMF
260 270 280 290 300
VGGVPGDCTE EEFRNFFNQF GRVLDATLMM DKDTGRPRGF GFVTYENESA
310 320 330 340 350
VEATMSQPYI TIHGKPVEVK RATPKASLRD SHDRHQHGYH GNANPYYAQN
360 370 380 390 400
MNMYGGMTPA MMAQYYRQMQ QYMEAMRNMP AAAGAVPYPQ PVMPAGMADW
410 420 430 440 450
QQQQQQGAAY FDPSKMNQGT GDGVPFSPSM PSGSSRGGYH GRNPGGPNRQ
460 470
RYRGRRDGRG GNTGGGHSFH PYRR
Length:474
Mass (Da):52,818
Last modified:May 1, 1999 - v1
Checksum:iAB7C735FAACEEF51
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA Translation: CAA22535.1
PIRiT40627
RefSeqiNP_595094.1, NM_001021001.2

Genome annotation databases

EnsemblFungiiSPBC660.15.1; SPBC660.15.1:pep; SPBC660.15
GeneIDi2541150
KEGGispo:SPBC660.15

Similar proteinsi

Entry informationi

Entry nameiYHKF_SCHPO
AccessioniPrimary (citable) accession number: O94432
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 13, 2007
Last sequence update: May 1, 1999
Last modified: May 23, 2018
This is version 116 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names

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