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Protein

Uncharacterized RNA-binding protein C660.15

Gene

SPBC660.15

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized RNA-binding protein C660.15
Gene namesi
ORF Names:SPBC660.15
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome II

Organism-specific databases

EuPathDBiFungiDB:SPBC660.15.
PomBaseiSPBC660.15.

Subcellular locationi

GO - Cellular componenti

  • cytoplasm Source: PomBase
  • mRNA cleavage factor complex Source: PomBase
  • nucleus Source: PomBase
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 474474Uncharacterized RNA-binding protein C660.15PRO_0000310812Add
BLAST

Proteomic databases

MaxQBiO94432.

Interactioni

Protein-protein interaction databases

BioGridi277665. 4 interactions.
MINTiMINT-4684112.

Structurei

3D structure databases

ProteinModelPortaliO94432.
SMRiO94432. Positions 160-325.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini163 – 24583RRM 1PROSITE-ProRule annotationAdd
BLAST
Domaini247 – 32478RRM 2PROSITE-ProRule annotationAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi401 – 4066Poly-Gln

Sequence similaritiesi

Contains 2 RRM (RNA recognition motif) domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

InParanoidiO94432.
KOiK14411.
OMAiENPFREE.
OrthoDBiEOG706125.
PhylomeDBiO94432.

Family and domain databases

Gene3Di3.30.70.330. 2 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 2 hits.
[Graphical view]
SMARTiSM00360. RRM. 2 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 2 hits.
PROSITEiPS50102. RRM. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O94432-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGGSDFEDDE LFKDLYGEEN EKKVESASGN QETSNVTPTK ENEGYEELEK
60 70 80 90 100
SGEAGAERTK ENPFREEPGA DFDRSGSDQQ YSAEAEANQE DDLNETSQQA
110 120 130 140 150
PDPSSYDIRG QALSSATWDN AEDGENSKND NYNENQSALT GSGAMESNED
160 170 180 190 200
NAEETSPFNR EDGKMFIGGL NWETTDDSLR DYFEQFGEVL DCTVMRDSTT
210 220 230 240 250
GRSRGFGFLT FKNPKCVNEV MSKEHHLDGK IIDPKRAIPR EEQEKTAKMF
260 270 280 290 300
VGGVPGDCTE EEFRNFFNQF GRVLDATLMM DKDTGRPRGF GFVTYENESA
310 320 330 340 350
VEATMSQPYI TIHGKPVEVK RATPKASLRD SHDRHQHGYH GNANPYYAQN
360 370 380 390 400
MNMYGGMTPA MMAQYYRQMQ QYMEAMRNMP AAAGAVPYPQ PVMPAGMADW
410 420 430 440 450
QQQQQQGAAY FDPSKMNQGT GDGVPFSPSM PSGSSRGGYH GRNPGGPNRQ
460 470
RYRGRRDGRG GNTGGGHSFH PYRR
Length:474
Mass (Da):52,818
Last modified:May 1, 1999 - v1
Checksum:iAB7C735FAACEEF51
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAA22535.1.
PIRiT40627.
RefSeqiNP_595094.1. NM_001021001.2.

Genome annotation databases

EnsemblFungiiSPBC660.15.1; SPBC660.15.1:pep; SPBC660.15.
GeneIDi2541150.
KEGGispo:SPBC660.15.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAA22535.1.
PIRiT40627.
RefSeqiNP_595094.1. NM_001021001.2.

3D structure databases

ProteinModelPortaliO94432.
SMRiO94432. Positions 160-325.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi277665. 4 interactions.
MINTiMINT-4684112.

Proteomic databases

MaxQBiO94432.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPBC660.15.1; SPBC660.15.1:pep; SPBC660.15.
GeneIDi2541150.
KEGGispo:SPBC660.15.

Organism-specific databases

EuPathDBiFungiDB:SPBC660.15.
PomBaseiSPBC660.15.

Phylogenomic databases

InParanoidiO94432.
KOiK14411.
OMAiENPFREE.
OrthoDBiEOG706125.
PhylomeDBiO94432.

Miscellaneous databases

NextBioi20802263.
PROiO94432.

Family and domain databases

Gene3Di3.30.70.330. 2 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 2 hits.
[Graphical view]
SMARTiSM00360. RRM. 2 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 2 hits.
PROSITEiPS50102. RRM. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of Schizosaccharomyces pombe."
    Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
    , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
    Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 972 / ATCC 24843.
  2. "ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe."
    Matsuyama A., Arai R., Yashiroda Y., Shirai A., Kamata A., Sekido S., Kobayashi Y., Hashimoto A., Hamamoto M., Hiraoka Y., Horinouchi S., Yoshida M.
    Nat. Biotechnol. 24:841-847(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiYHKF_SCHPO
AccessioniPrimary (citable) accession number: O94432
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 13, 2007
Last sequence update: May 1, 1999
Last modified: January 20, 2016
This is version 100 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.