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Protein

Uncharacterized ATP-dependent helicase C29A10.10c

Gene

SPBC29A10.10c

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi1293 – 13008ATPBy similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Helicase, Hydrolase

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized ATP-dependent helicase C29A10.10c (EC:3.6.4.-)
Gene namesi
ORF Names:SPBC29A10.10c
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome II

Organism-specific databases

EuPathDBiFungiDB:SPBC29A10.10c.
PomBaseiSPBC29A10.10c.

Subcellular locationi

GO - Cellular componenti

  • Nrd1 complex Source: PomBase
  • nucleus Source: PomBase
  • site of double-strand break Source: PomBase
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 19441944Uncharacterized ATP-dependent helicase C29A10.10cPRO_0000350747Add
BLAST

Proteomic databases

MaxQBiO94387.

Interactioni

Protein-protein interaction databases

BioGridi277051. 37 interactions.
MINTiMINT-4683704.

Structurei

3D structure databases

ProteinModelPortaliO94387.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the DNA2/NAM7 helicase family.Curated

Phylogenomic databases

InParanoidiO94387.
KOiK10706.
OrthoDBiEOG70PC5T.
PhylomeDBiO94387.

Family and domain databases

Gene3Di3.40.50.300. 3 hits.
InterProiIPR016024. ARM-type_fold.
IPR024481. Helicase_Sen1_N.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF12726. SEN1_N. 1 hit.
[Graphical view]
SUPFAMiSSF48371. SSF48371. 3 hits.
SSF52540. SSF52540. 1 hit.

Sequencei

Sequence statusi: Complete.

O94387-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MENDEAFDRL IRKIQENQKH PSFEGSNKVL HLALSYLNTN RQNPHWVCDP
60 70 80 90 100
KLQVAVRECL FLFSFQNDNE YLVWFKKHLN ERLQLCPKCI VKYHQSLDDF
110 120 130 140 150
KSLCLNIFHF DPNTLEIVME KIYSWDIFRL QEVLKTVPKI DTSSASKPIL
160 170 180 190 200
CAFYEILYSP RILHNKEIFP LFRNRFLESG FLRLSKNLVP GVISLLFSRD
210 220 230 240 250
DELRRWACSI LSDVKTISDN EFKILEGPLL QEIRSLDQKK ENENEMQIFL
260 270 280 290 300
KGLSLLLKHV DHLYFRGLTG KNFNVADFIL SGLQSDHTNL CPSFLVCLHS
310 320 330 340 350
LLYCYGRNFW TPEISPSEVI DKIFNGNAYK RWTEENTSNF SNDQKAENPF
360 370 380 390 400
EWATSLLKTI SIIDEVELIN KILINYTMQY KKELEVGFKN VQLLQSLADI
410 420 430 440 450
FSVLFSEYFM IFPHSDQSLQ NKVFELHSTL AIKFDELFRL LNLENEESVE
460 470 480 490 500
WRLIKKVFEY RLNLDLYILK QFYCHYLDRN RKPPLNIKSV SESFKNFWVY
510 520 530 540 550
LQNVFREEKF FMVRIVFRAC STVCLIDKLP PKKVDIPFKS DFENALNGFV
560 570 580 590 600
ATFSEMLIQT QCWHLSAQTQ LVSNPLTFRG IFSLVFSPIL EISTGSISII
610 620 630 640 650
KSISLSDSVV DTIGELLRSQ FSNTLNSSCY VLLQWLKVRN FGGAKHIVYF
660 670 680 690 700
NKLIINTIFD SVDGLTSKDA TFAKQVEKKE SLKNFWESLW KFFTHFFIVL
710 720 730 740 750
PTWPVHDKDN LVDLMRDTLD FCDMLINIFE EVNGFIFGLS DNDIKIVSAN
760 770 780 790 800
DKGSALAMCI ADSLVTVSYW LKLTDSSLLT SVVKVICKML KICKKLECPI
810 820 830 840 850
SQNVIDIIHR ASITSDEQTI LTFTEREDLF ISLTPYLSED VLNHSPFNDT
860 870 880 890 900
NTLETKLQSD DRGLLSKDQT IGIAKKLPES NISTSNHFLL PPKAISASKA
910 920 930 940 950
INRNAQKSQN LNFLKSKQET TQRIRESAKV PRTSAGNHLS EKLNSDNHIP
960 970 980 990 1000
KALQKLDSAD PIRKPSLLHT SKSYSNPDDK NTSTSDEDTS ESEEESSNGL
1010 1020 1030 1040 1050
FSLAREANSH ASKSLPQRRQ IQFLDFDSLK TKNVVHPTQL RRNTQQSAQL
1060 1070 1080 1090 1100
ARLRLNPDVQ EFYKVILGWN PLADSFSASN VEMQCVQAKF TYNDSNAYEK
1110 1120 1130 1140 1150
VFKPMLFHEC WAQVKSAVEE KQYPPIDLIL NTRSTVDNFV DIYFTSCSPT
1160 1170 1180 1190 1200
EVSFLSDTDI CLLSKSQSSG DTNNPKSFQL CKIQSISRKK ESLELCLRMN
1210 1220 1230 1240 1250
IESIDLQEYA PNIRFTAQKL FNATTSLREF AALKSLRHLP LSQRILDANV
1260 1270 1280 1290 1300
TRLPSNFTDD KKQKIMKSYG VNEPQAYAIY ASSVNDGFTL IQGPPGTGKT
1310 1320 1330 1340 1350
KTILGMIGAV LTSSSQGLQF NVPGQTRKTS KNKILICAPS NAAIDEILLR
1360 1370 1380 1390 1400
IKAGVYDHEG IKFFPKVIRV GFGDSISVHA KEFTLEEQMI KQMELTNLKK
1410 1420 1430 1440 1450
DQEANNSSDT RKKYDSIIKK RDSLREDLEK FRSTGKNSSI LEAQLREITK
1460 1470 1480 1490 1500
QKNMLEQSLD DMRERQRSTN RNLDVLKKQI QNQLLQEADI VCATLSASGH
1510 1520 1530 1540 1550
ELLLNAGLTF RTVIIDEAAQ AVELSSIIPL KYGCESCVMV GDPNQLPPTV
1560 1570 1580 1590 1600
LSKTSAKFGY SQSLYVRMFK QHNESACLLS IQYRMNPEIS RFPSKFFYNS
1610 1620 1630 1640 1650
KLLDGPNMSA VTSRPWHEDP QLGIYRFFNV HGTEAFSNSK SLYNVEEASF
1660 1670 1680 1690 1700
ILLLYERLIQ CYLNIDFEGK IGVVTPYRSQ VQQLRSQFQR KYGSIIFKHL
1710 1720 1730 1740 1750
DIHTVDGFQG QEKDIIIFSC VRSSMSGGIG FLQDLRRLNV ALTRAKSSLY
1760 1770 1780 1790 1800
IVGNSKPLMQ EDIFYSLIED AKTRGVWRDL SANQFKNSKS ISNVSTHLAS
1810 1820 1830 1840 1850
NNLNLASRDT PIKSPSVGIC EEKQEAHKVK KRHNIDSANL SRGTERDEDI
1860 1870 1880 1890 1900
PNKRAKNKVS TDQTAADNKV TKPRLDESSS SKQDVLNKID ESEIEQASSK
1910 1920 1930 1940
KPGYVEKNKD KGHMKKSKKP KSKLALAAMA HGFAPPKVEH FKRK
Length:1,944
Mass (Da):222,211
Last modified:May 1, 1999 - v1
Checksum:i12B005A934BEE11C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAA22438.1.
PIRiT40065.
RefSeqiNP_596055.1. NM_001021966.2.

Genome annotation databases

EnsemblFungiiSPBC29A10.10c.1; SPBC29A10.10c.1:pep; SPBC29A10.10c.
GeneIDi2540523.
KEGGispo:SPBC29A10.10c.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAA22438.1.
PIRiT40065.
RefSeqiNP_596055.1. NM_001021966.2.

3D structure databases

ProteinModelPortaliO94387.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi277051. 37 interactions.
MINTiMINT-4683704.

Proteomic databases

MaxQBiO94387.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPBC29A10.10c.1; SPBC29A10.10c.1:pep; SPBC29A10.10c.
GeneIDi2540523.
KEGGispo:SPBC29A10.10c.

Organism-specific databases

EuPathDBiFungiDB:SPBC29A10.10c.
PomBaseiSPBC29A10.10c.

Phylogenomic databases

InParanoidiO94387.
KOiK10706.
OrthoDBiEOG70PC5T.
PhylomeDBiO94387.

Miscellaneous databases

PROiO94387.

Family and domain databases

Gene3Di3.40.50.300. 3 hits.
InterProiIPR016024. ARM-type_fold.
IPR024481. Helicase_Sen1_N.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF12726. SEN1_N. 1 hit.
[Graphical view]
SUPFAMiSSF48371. SSF48371. 3 hits.
SSF52540. SSF52540. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of Schizosaccharomyces pombe."
    Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
    , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
    Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 972 / ATCC 24843.
  2. "ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe."
    Matsuyama A., Arai R., Yashiroda Y., Shirai A., Kamata A., Sekido S., Kobayashi Y., Hashimoto A., Hamamoto M., Hiraoka Y., Horinouchi S., Yoshida M.
    Nat. Biotechnol. 24:841-847(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiYGSA_SCHPO
AccessioniPrimary (citable) accession number: O94387
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 23, 2008
Last sequence update: May 1, 1999
Last modified: June 8, 2016
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.