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Protein

PWWP domain-containing protein2

Gene

pdp2

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
PWWP domain-containing protein2
Gene namesi
Name:pdp2
ORF Names:SPBC215.07c
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome II

Organism-specific databases

EuPathDBiFungiDB:SPBC215.07c.
PomBaseiSPBC215.07c. pdp2.

Subcellular locationi

GO - Cellular componenti

  • nuclear chromatin Source: PomBase
  • nucleus Source: PomBase
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 568568PWWP domain-containing protein2PRO_0000116768Add
BLAST

Proteomic databases

MaxQBiO94312.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

BioGridi277178. 21 interactions.
MINTiMINT-4683112.

Structurei

Secondary structure

1
568
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi128 – 1336Combined sources
Beta strandi136 – 1438Combined sources
Helixi146 – 1483Combined sources
Helixi151 – 1555Combined sources
Beta strandi160 – 1623Combined sources
Beta strandi165 – 1695Combined sources
Turni170 – 1734Combined sources
Beta strandi176 – 1783Combined sources
Helixi180 – 1823Combined sources
Beta strandi183 – 1853Combined sources
Helixi188 – 1969Combined sources
Helixi203 – 21412Combined sources
Helixi218 – 2203Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1H3ZNMR-A118-225[»]
ProteinModelPortaliO94312.
SMRiO94312. Positions 118-225.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO94312.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini125 – 18965PWWPPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 PWWP domain.PROSITE-ProRule annotation

Phylogenomic databases

InParanoidiO94312.
OMAiQPREDEM.
OrthoDBiEOG7NGQPK.
PhylomeDBiO94312.

Family and domain databases

InterProiIPR000313. PWWP_dom.
[Graphical view]
PfamiPF00855. PWWP. 1 hit.
[Graphical view]
SMARTiSM00293. PWWP. 1 hit.
[Graphical view]
PROSITEiPS50812. PWWP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O94312-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTEIKDSSVK DENPGKQEES SIAVESREMS TATNNSKNIE TTSSNGAEDI
60 70 80 90 100
KIQRDVGDDK DLDDKEANDK SSKGLEEESD SKDRKTIETD QPSNNIGDIK
110 120 130 140 150
SQKSEKSNGN ARKETKQSER VNYKPGMRVL TKMSGFPWWP SMVVTESKMT
160 170 180 190 200
SVARKSKPKR AGTFYPVIFF PNKEYLWTGS DSLTPLTSEA ISQFLEKPKP
210 220 230 240 250
KTASLIKAYK MAQSTPDLDS LSVPSSESEV SEEESDQEMS EPSPIEEDYN
260 270 280 290 300
DTKARRITRK GTKKKTVTFD PSLESVPQKR LNASSNVSSN PAKKTRVSPR
310 320 330 340 350
RSTAASKKKS PSSKRASSDE IEKDKEEEEG SVANEEDVAK RTFHSREQSL
360 370 380 390 400
LFLRHKLQSS LLSPKQDLSQ VDYKLVHNYL DKLANFQGID VPLIQKTKIA
410 420 430 440 450
VVVRKIFSLA GLPKENEDEV KSICGDILEN RWKSLLQEIS SQKQLSTDAS
460 470 480 490 500
QTQDASIANE NETEIASLDE GSESKPTPSP PAEQLTDQKQ NEDNEDKVKA
510 520 530 540 550
DSNGPTQNEN ETADASKDMI SEEKSSKDAD NSLEVAGKDF AEDGTEQTPN
560
LAEPEDGVAA VDLSTGQK
Length:568
Mass (Da):62,825
Last modified:May 1, 1999 - v1
Checksum:iD54F73C9F6E51991
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAA22121.1.
PIRiT39897.
RefSeqiNP_596684.1. NM_001022607.2.

Genome annotation databases

EnsemblFungiiSPBC215.07c.1; SPBC215.07c.1:pep; SPBC215.07c.
GeneIDi2540653.
KEGGispo:SPBC215.07c.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAA22121.1.
PIRiT39897.
RefSeqiNP_596684.1. NM_001022607.2.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1H3ZNMR-A118-225[»]
ProteinModelPortaliO94312.
SMRiO94312. Positions 118-225.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi277178. 21 interactions.
MINTiMINT-4683112.

Proteomic databases

MaxQBiO94312.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPBC215.07c.1; SPBC215.07c.1:pep; SPBC215.07c.
GeneIDi2540653.
KEGGispo:SPBC215.07c.

Organism-specific databases

EuPathDBiFungiDB:SPBC215.07c.
PomBaseiSPBC215.07c. pdp2.

Phylogenomic databases

InParanoidiO94312.
OMAiQPREDEM.
OrthoDBiEOG7NGQPK.
PhylomeDBiO94312.

Miscellaneous databases

EvolutionaryTraceiO94312.
NextBioi20801777.
PROiO94312.

Family and domain databases

InterProiIPR000313. PWWP_dom.
[Graphical view]
PfamiPF00855. PWWP. 1 hit.
[Graphical view]
SMARTiSM00293. PWWP. 1 hit.
[Graphical view]
PROSITEiPS50812. PWWP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The genome sequence of Schizosaccharomyces pombe."
    Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
    , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
    Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 972 / ATCC 24843.
  2. Cited for: STRUCTURE BY NMR OF 118-225.

Entry informationi

Entry nameiPDP2_SCHPO
AccessioniPrimary (citable) accession number: O94312
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 31, 2004
Last sequence update: May 1, 1999
Last modified: May 11, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.