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Protein
Submitted name:

Y box binding protein 1

Gene

ybx1

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • DNA binding Source: InterPro
  • eukaryotic initiation factor 4E binding Source: ZFIN
  • RNA binding Source: ZFIN

GO - Biological processi

  • establishment of RNA localization Source: ZFIN
  • negative regulation of mRNA polyadenylation Source: ZFIN
  • negative regulation of mRNA processing Source: ZFIN
  • negative regulation of mRNA splicing, via spliceosome Source: ZFIN
  • negative regulation of translational initiation Source: ZFIN
  • regulation of transcription, DNA-templated Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Y box binding protein 1Imported
Submitted name:
ZfY1Imported
Gene namesi
Name:ybx1Imported
Synonyms:nsep1Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-000629-3. ybx1.

Interactioni

GO - Molecular functioni

  • eukaryotic initiation factor 4E binding Source: ZFIN

Protein-protein interaction databases

STRINGi7955.ENSDARP00000010482.

Structurei

3D structure databases

ProteinModelPortaliO93584.
SMRiO93584. Positions 32-109.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini40 – 10869CSPInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 CSD (cold-shock) domain.UniRule annotation

Phylogenomic databases

eggNOGiKOG3070. Eukaryota.
COG1278. LUCA.
HOVERGENiHBG008757.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR019844. Cold-shock_CS.
IPR011129. Cold_shock_prot.
IPR002059. CSP_DNA-bd.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00313. CSD. 1 hit.
[Graphical view]
PRINTSiPR00050. COLDSHOCK.
SMARTiSM00357. CSP. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00352. COLD_SHOCK. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O93584-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSEAETQQP PQPAADAESP SSPAAAATAG DKKVIATKVL GTVKWFNVRN
60 70 80 90 100
GYGFINRNDT KEDVFVHQTA IKKNNPRKYL RSVGDGETVE FDVVEGEKGA
110 120 130 140 150
EAANVTGPGG VPVQGSKYAA DRNRYRRYPR RRAPPRDYQE NYQSDPEAEP
160 170 180 190 200
REKREGAESA PEGEMQQQQR RPTYPGRRRY PPYFVRRRYG RRPPYTNSQR
210 220 230 240 250
GEMTEGGEGE ENQGGPDQGN KPMRQNYYRG FRPSRGPPRP RPVRDGEEDK
260 270 280 290 300
ENQSESGQNQ EPRQRRYRRN FNYRRRRPQT TKPQDGKDSK AADASADKSA
310
APEAEQGGAD
Length:310
Mass (Da):35,022
Last modified:November 1, 1998 - v1
Checksum:i64430D39DD56D0DE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF093129 mRNA. Translation: AAC62774.1.
BC160650 mRNA. Translation: AAI60650.1.
RefSeqiNP_571695.1. NM_131620.1.
UniGeneiDr.59019.

Genome annotation databases

GeneIDi795398.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF093129 mRNA. Translation: AAC62774.1.
BC160650 mRNA. Translation: AAI60650.1.
RefSeqiNP_571695.1. NM_131620.1.
UniGeneiDr.59019.

3D structure databases

ProteinModelPortaliO93584.
SMRiO93584. Positions 32-109.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000010482.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi795398.

Organism-specific databases

CTDi4904.
ZFINiZDB-GENE-000629-3. ybx1.

Phylogenomic databases

eggNOGiKOG3070. Eukaryota.
COG1278. LUCA.
HOVERGENiHBG008757.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR019844. Cold-shock_CS.
IPR011129. Cold_shock_prot.
IPR002059. CSP_DNA-bd.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00313. CSD. 1 hit.
[Graphical view]
PRINTSiPR00050. COLDSHOCK.
SMARTiSM00357. CSP. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00352. COLD_SHOCK. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Chang B.-E., Kuo C.-M.
    Submitted (SEP-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "Molecular cloning of a cold-shock domain protein, zfY1, in zebrafish embryo(1)."
    Chang B.E., Lin C.Y., Kuo C.M.
    Biochim. Biophys. Acta 1433:343-349(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  3. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: EmbryoImported.

Entry informationi

Entry nameiO93584_DANRE
AccessioniPrimary (citable) accession number: O93584
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: June 8, 2016
This is version 115 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.