Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Paraxial protocadherin

Gene
N/A
Organism
Xenopus laevis (African clawed frog)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • calcium ion binding Source: InterPro
  • frizzled binding Source: UniProtKB

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

CalciumSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Paraxial protocadherinImported
OrganismiXenopus laevis (African clawed frog)Imported
Taxonomic identifieri8355 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusXenopus

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei691 – 71525HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2222Sequence analysisAdd
BLAST
Chaini23 – 979957Sequence analysisPRO_5004160699Add
BLAST

Interactioni

GO - Molecular functioni

  • frizzled binding Source: UniProtKB

Structurei

3D structure databases

ProteinModelPortaliO93509.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini29 – 129101CadherinInterPro annotationAdd
BLAST
Domaini130 – 238109CadherinInterPro annotationAdd
BLAST
Domaini239 – 346108CadherinInterPro annotationAdd
BLAST
Domaini361 – 45797CadherinInterPro annotationAdd
BLAST
Domaini458 – 567110CadherinInterPro annotationAdd
BLAST
Domaini584 – 683100CadherinInterPro annotationAdd
BLAST

Keywords - Domaini

RepeatSAAS annotation, SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

HOVERGENiHBG054878.

Family and domain databases

Gene3Di2.60.40.60. 6 hits.
InterProiIPR002126. Cadherin.
IPR015919. Cadherin-like.
IPR020894. Cadherin_CS.
IPR013164. Cadherin_N.
IPR030711. Protocadherin-8.
[Graphical view]
PANTHERiPTHR24028:SF46. PTHR24028:SF46. 1 hit.
PfamiPF00028. Cadherin. 5 hits.
PF08266. Cadherin_2. 1 hit.
[Graphical view]
PRINTSiPR00205. CADHERIN.
SMARTiSM00112. CA. 6 hits.
[Graphical view]
SUPFAMiSSF49313. SSF49313. 5 hits.
PROSITEiPS00232. CADHERIN_1. 5 hits.
PS50268. CADHERIN_2. 6 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O93509-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLLLFRAIPM LLLGLMVLQT DCEIAQYYID EEEPPGTVIA VLSQHSIFNT
60 70 80 90 100
TDIPATNFRL MKQFNNSLIG VRESDGQLSI MERIDREQIC RQSLHCNLAL
110 120 130 140 150
DVVSFSKGHF KLLNVKVEVR DINDHSPHFP SEIMHVEVSE SSSVGTRIPL
160 170 180 190 200
EIAIDEDVGS NSIQNFQISN NSHFSIDVLT RADGVKYADL VLMRELDREI
210 220 230 240 250
QPTYIMELLA MDGGVPSLSG TAVVNIRVLD FNDNSPVFER STIAVDLVED
260 270 280 290 300
APLGYLLLEL HATDDDEGVN GEIVYGFSTL ASQEVRQLFK INSRTGSVTL
310 320 330 340 350
EGQVDFETKQ TYEFEVQAQD LGPNPLTATC KVTVHILDVN DNTPAITITP
360 370 380 390 400
LTTVNAGVAY IPETATKENF IALISTTDRA SGSNGQVRCT LYGHEHFKLQ
410 420 430 440 450
QAYEDSYMIV TTSTLDRENI AAYSLTVVAE DLGFPSLKTK KYYTVKVSDE
460 470 480 490 500
NDNAPVFSKP QYEASILENN APGSYITTVI ARDSDSDQNG KVNYRLVDAK
510 520 530 540 550
VMGQSLTTFV SLDADSGVLR AVRSLDYEKL KQLDFEIEAA DNGIPQLSTR
560 570 580 590 600
VQLNLRIVDQ NDNCPVITNP LLNNGSGEVL LPISAPQNYL VFQLKAEDSD
610 620 630 640 650
EGHNSQLFYT ILRDPSRLFA INKESGEVFL KKQLNSDHSE DLSIVVAVYD
660 670 680 690 700
LGRPSLSTNA TVKFILTDSF PSNVEVVILQ PSAEEQHQID MSIIFIAVLA
710 720 730 740 750
GGCALLLLAI FFVACTCKKK AGEFKQVPEQ HGTCNEERLL STPSPQSVSS
760 770 780 790 800
SLSQSESCQL SINTESENCS VSSNQEQHQQ TGIKHSISVP SYHTSGWHLD
810 820 830 840 850
NCAMSISGHS HMGHISTKDS GKGDSDFNDS DSDTSGESQK KSIEQPMQAQ
860 870 880 890 900
ASAQYTDESA GFRHADNYFS HRINKGPENG NCTLQYEKGY RLSYSVAPAH
910 920 930 940 950
YNTYHARMPN LHIPNHTLRD PYYHINNPVA NRMHAEYERD LVNRSATLSP
960 970
QRSSSRYQEF NYSPQISRQL HPSEIATTF
Length:979
Mass (Da):108,615
Last modified:November 1, 1998 - v1
Checksum:i05B2EFF583A6651F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF042192 mRNA. Translation: AAC62386.1.
UniGeneiXl.1108.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF042192 mRNA. Translation: AAC62386.1.
UniGeneiXl.1108.

3D structure databases

ProteinModelPortaliO93509.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

HOVERGENiHBG054878.

Family and domain databases

Gene3Di2.60.40.60. 6 hits.
InterProiIPR002126. Cadherin.
IPR015919. Cadherin-like.
IPR020894. Cadherin_CS.
IPR013164. Cadherin_N.
IPR030711. Protocadherin-8.
[Graphical view]
PANTHERiPTHR24028:SF46. PTHR24028:SF46. 1 hit.
PfamiPF00028. Cadherin. 5 hits.
PF08266. Cadherin_2. 1 hit.
[Graphical view]
PRINTSiPR00205. CADHERIN.
SMARTiSM00112. CA. 6 hits.
[Graphical view]
SUPFAMiSSF49313. SSF49313. 5 hits.
PROSITEiPS00232. CADHERIN_1. 5 hits.
PS50268. CADHERIN_2. 6 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO93509_XENLA
AccessioniPrimary (citable) accession number: O93509
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: May 11, 2016
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.