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Protein
Submitted name:

Winged-helix transcription factor

Gene

cFKH-1

Organism
Gallus gallus (Chicken)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

DNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Winged-helix transcription factorImported
Gene namesi
Name:cFKH-1Imported
OrganismiGallus gallus (Chicken)Imported
Taxonomic identifieri9031 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeGalloanseraeGalliformesPhasianidaePhasianinaeGallus

Structurei

3D structure databases

ProteinModelPortaliO93440.
SMRiO93440. Positions 37-129.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini39 – 13395Fork-head DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains fork-head DNA-binding domain.SAAS annotation

Phylogenomic databases

HOVERGENiHBG051640.
KOiK09396.
PhylomeDBiO93440.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR001766. Fork_head_dom.
IPR018122. TF_fork_head_CS_1.
IPR030456. TF_fork_head_CS_2.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00250. Forkhead. 1 hit.
[Graphical view]
PRINTSiPR00053. FORKHEAD.
SMARTiSM00339. FH. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS00657. FORK_HEAD_1. 1 hit.
PS00658. FORK_HEAD_2. 1 hit.
PS50039. FORK_HEAD_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O93440-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGNPMSVYSG HAEQYAAGMG RSYGPYHPHQ PAAPKDLVKP PYSYIALITM
60 70 80 90 100
AIQNAPDKKI TLNGIYQFIM ERFPFYRDNK QGWQNSIRHN LSLNECFVKV
110 120 130 140 150
PRDDKKPGKG SYWTLDPDSY NMFENGSFLR RRRRFKKKDA VKDKEEKDRL
160 170 180 190 200
HLKDHAPPPP RPPPTAATGA EPEGGGPPAA GAAPPPVRIQ DIKTENGTAS
210 220 230 240 250
PPQAVSPPGA APPLGAVPKI ESPDSSSSLS SGGSPRGGAL PAARSLGMEG
260 270 280 290 300
PEPPPPPPPP PPPPPPPPHH HGPGFSVDNI MTSLRGSPQA AELGAGLLPP
310 320 330 340 350
AAAAPRSSLP PALSLGAYSP GHSSAVYGSP CGQPAAAAAG SYHCNMQSMS
360 370 380 390 400
LFTRRRGATS GPAGHLPAAS PAEDPLPDYA MPGGGGGGAA NGGAGSGGGP
410 420 430 440 450
GGGGGGGGGA GGGHQEGHHP HPHPHQGRLA SWYLNQAAAA AAAAAAAAGE
460 470 480 490 500
LGYAGPQQSF AAGPRDVFEA PRDGAQRLAR RRRRRRRRQR GERRRRWSGG
510 520
RRQLSDGVPG SQPLYAPPGT FVYDCGKF
Length:528
Mass (Da):54,830
Last modified:November 1, 1998 - v1
Checksum:i87FD601D05F78128
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y17794 mRNA. Translation: CAA76851.1.
RefSeqiNP_990337.1. NM_205006.1.
UniGeneiGga.51501.
Gga.9444.

Genome annotation databases

GeneIDi395856.
KEGGigga:395856.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y17794 mRNA. Translation: CAA76851.1.
RefSeqiNP_990337.1. NM_205006.1.
UniGeneiGga.51501.
Gga.9444.

3D structure databases

ProteinModelPortaliO93440.
SMRiO93440. Positions 37-129.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi395856.
KEGGigga:395856.

Organism-specific databases

CTDi2296.

Phylogenomic databases

HOVERGENiHBG051640.
KOiK09396.
PhylomeDBiO93440.

Miscellaneous databases

NextBioi20815923.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR001766. Fork_head_dom.
IPR018122. TF_fork_head_CS_1.
IPR030456. TF_fork_head_CS_2.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00250. Forkhead. 1 hit.
[Graphical view]
PRINTSiPR00053. FORKHEAD.
SMARTiSM00339. FH. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS00657. FORK_HEAD_1. 1 hit.
PS00658. FORK_HEAD_2. 1 hit.
PS50039. FORK_HEAD_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Chicken winged-helix transcription factor cFKH-1 prefigures axial and appendicular skeletal structures during chicken embryogenesis."
    Buchberger A., Schwarzer M., Brand T., Pabst O., Seidl K., Arnold H.H.
    Dev. Dyn. 212:94-101(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: HeartImported and Total embryoImported.

Entry informationi

Entry nameiO93440_CHICK
AccessioniPrimary (citable) accession number: O93440
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: May 11, 2016
This is version 109 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.