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Protein
Submitted name:

Stomatin

Gene

stom

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
StomatinImported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:stomImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 21

Organism-specific databases

ZFINiZDB-GENE-980526-486. stom.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei34 – 5623HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Expressioni

Gene expression databases

BgeeiENSDARG00000003835.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000120230.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini54 – 213160PHBInterPro annotationAdd
BLAST

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG2621. Eukaryota.
COG0330. LUCA.
GeneTreeiENSGT00550000074454.
HOGENOMiHOG000217040.
HOVERGENiHBG004815.
KOiK17286.
TreeFamiTF105750.

Family and domain databases

InterProiIPR001107. Band_7.
IPR018080. Band_7/stomatin-like_CS.
IPR028515. Stomatin.
IPR001972. Stomatin_fam.
[Graphical view]
PANTHERiPTHR10264. PTHR10264. 1 hit.
PTHR10264:SF86. PTHR10264:SF86. 1 hit.
PfamiPF01145. Band_7. 1 hit.
[Graphical view]
PRINTSiPR00721. STOMATIN.
SMARTiSM00244. PHB. 1 hit.
[Graphical view]
SUPFAMiSSF117892. SSF117892. 1 hit.
PROSITEiPS01270. BAND_7. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O93423-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEDGRETAAM REEERRKRQI ALENTDSDIG LCGWILVIFS ILLTLLTLPL
60 70 80 90 100
SIWMCIKIVK EYERAIIFRL GRILRGGAKG PGLFFILPCT DSFINVDMRT
110 120 130 140 150
ITFDIPPQEV LTKDSVTVSV DGVVYYRVQN ATLAVANITN ADAATRLLAQ
160 170 180 190 200
TTLRNVLGTK NLAEILSDRE EIAHSMQSTL DDATDDWGIK VERVEIKDVK
210 220 230 240 250
LPLQLQRAMA AEAEASREAR AKVIAAEGEM NASRALKEAS LVIAESPSAL
260 270 280
QLRYLQTLNT IAAEKNSTII FPLPIDMMQS FLKH
Length:284
Mass (Da):31,605
Last modified:November 1, 1998 - v1
Checksum:iC1F7826314AA7DE4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR762400 Genomic DNA. No translation available.
Y13473 mRNA. Translation: CAA73876.1.
RefSeqiNP_571833.1. NM_131758.2.
UniGeneiDr.75837.

Genome annotation databases

EnsembliENSDART00000005750; ENSDARP00000010282; ENSDARG00000003835.
GeneIDi81534.
KEGGidre:81534.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR762400 Genomic DNA. No translation available.
Y13473 mRNA. Translation: CAA73876.1.
RefSeqiNP_571833.1. NM_131758.2.
UniGeneiDr.75837.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000120230.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000005750; ENSDARP00000010282; ENSDARG00000003835.
GeneIDi81534.
KEGGidre:81534.

Organism-specific databases

CTDi2040.
ZFINiZDB-GENE-980526-486. stom.

Phylogenomic databases

eggNOGiKOG2621. Eukaryota.
COG0330. LUCA.
GeneTreeiENSGT00550000074454.
HOGENOMiHOG000217040.
HOVERGENiHBG004815.
KOiK17286.
TreeFamiTF105750.

Gene expression databases

BgeeiENSDARG00000003835.

Family and domain databases

InterProiIPR001107. Band_7.
IPR018080. Band_7/stomatin-like_CS.
IPR028515. Stomatin.
IPR001972. Stomatin_fam.
[Graphical view]
PANTHERiPTHR10264. PTHR10264. 1 hit.
PTHR10264:SF86. PTHR10264:SF86. 1 hit.
PfamiPF01145. Band_7. 1 hit.
[Graphical view]
PRINTSiPR00721. STOMATIN.
SMARTiSM00244. PHB. 1 hit.
[Graphical view]
SUPFAMiSSF117892. SSF117892. 1 hit.
PROSITEiPS01270. BAND_7. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO93423_DANRE
AccessioniPrimary (citable) accession number: O93423
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: September 7, 2016
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.