O93420 (O93420_DANRE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Survival motor neuron protein EMBL AAC32608.1

Gene names

Name:	smn1 ZFIN ZDB-GENE-990715-16
Synonyms:	smn ZFIN ZDB-GENE-990715-16

Organism

Danio rerio (Zebrafish) (Brachydanio rerio) EMBL AAC32608.1

Taxonomic identifier

7955 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Ostariophysi › Cypriniformes › Cyprinidae › Danio

Protein attributes

Sequence length	285 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Gene Ontology (GO)
Biological process	axon extension involved in development Inferred from mutant phenotype. Source: ZFIN mRNA processing Inferred from electronic annotation. Source: InterPro neuromuscular junction development Inferred from mutant phenotype. Source: ZFIN
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro nucleus Inferred from electronic annotation. Source: InterPro
Molecular function	RNA binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	O93420 [UniParc]. Last modified November 1, 1998. Version 1. Checksum: 1E01E9F02074942D	FASTA	285	31,495
	10 20 30 40 50 60 MANGAEDVVF CRGTGQSDDS DIWDDTALIK AYDKAVASFK NALKGEDGAT PQENDNPGKK 70 80 90 100 110 120 RKNNKKNKSR KRCTAAPDKE WQVGDSCYAF WSEDGNLYTA TITSFDQEKG TCVVFYTDYG 130 140 150 160 170 180 NEEEQNLSDL LTEPPDVDED ALKTANVKET ESSTEESDRS FHPTEVRSCK AKSKSNFPMG 190 200 210 220 230 240 PPSWFPRFPP GPPPPPPHFK KMDGRRGEGP SLGWPPSLPG WPPMIPLGPP MIPPPPPMSP 250 260 270 280 DFGEDDEALG SMLISWYMSG YHTGIYMGLR QGRKEAAASK KSHRK

References

[1]	"Cloning and Characterization of zebrafish survival motor neuron gene: Homolog of Spinal Muscular atrophy determining gene." Kathuria S., Burghes A.H.M. Thesis (1998), Unknown Institution Cited for: NUCLEOTIDE SEQUENCE.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AF083557 mRNA. Translation: AAC32608.1.
IPI	IPI00495484.
UniGene	Dr.75206.
3D structure databases
HSSP	HSSP built from PDB template 1MHN based on UniProtKB Q16637.
ProteinModelPortal	O93420.
SMR	O93420. Positions 79-132.
ModBase	Search...
Protein-protein interaction databases
STRING	O93420.
Proteomic databases
PRIDE	O93420.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Organism-specific databases
ZFIN	ZDB-GENE-990715-16. smn1.
Phylogenomic databases
GeneTree	ENSGT00560000077236.
HOGENOM	HBG713387.
HOVERGEN	HBG000211.
InParanoid	O93420.
Gene expression databases
ArrayExpress	O93420.
Bgee	O93420.
Family and domain databases
InterPro	IPR010304. Survival_motor_neuron. IPR002999. Tudor. IPR018351. Tudor_subgr. [Graphical view]
Pfam	PF06003. SMN. 1 hit. [Graphical view]
SMART	SM00333. TUDOR. 1 hit. [Graphical view]
PROSITE	PS50304. TUDOR. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

O93420_DANRE

Accession

Primary (citable) accession number: O93420

Entry history

Integrated into UniProtKB/TrEMBL:	November 1, 1998
Last sequence update:	November 1, 1998
Last modified:	July 27, 2011
This is version 55 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)