O93311 (O93311_DANRE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Odd-paired-like EMBL AAC25102.1

Submitted name:
Zic family member 1 (Odd-paired homolog, Drosophila) EMBL AAI15247.1
Submitted name:
Zic family member 1 (odd-paired homolog, Drosophila) Ensembl ENSDARP00000106790

Gene names

Name:	zic1 ZFIN ZDB-GENE-000208-4 Ensembl ENSDARP00000106790
Synonyms:	opl EMBL AAC25102.1

Organism

Danio rerio (Zebrafish) (Brachydanio rerio) EMBL AAC25102.1

Taxonomic identifier

7955 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Ostariophysi › Cypriniformes › Cyprinidae › Danio

Protein attributes

Sequence length	442 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	embryonic retina morphogenesis in camera-type eye Inferred from mutant phenotype. Source: ZFIN forebrain morphogenesis Inferred from mutant phenotype. Source: ZFIN fourth ventricle development Inferred from mutant phenotype. Source: ZFIN
Cellular component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular function	nucleic acid binding Inferred from electronic annotation. Source: InterPro zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	O93311 [UniParc]. Last modified November 1, 1998. Version 1. Checksum: 99B700134BC77E2B	FASTA	442	48,388
	10 20 30 40 50 60 MLLDAGPQYP TIGVTTFGST RHHSTGEVTD REVALGINPF ADGMGAFKIN HSSHDLGSGQ 70 80 90 100 110 120 TAFSSQAPGY AAAALGHHHH PTHVSSYSTA AFNSTRDFLF RNRGFGDATS AQHSLFASAA 130 140 150 160 170 180 GSFAGPHGHS DAAGHLLFPG LHEQAATHAS SNVVNSQMRL GFSGDMYGRA EQYGHVASPR 190 200 210 220 230 240 SEHYASTQLH GYGPMNMNMA AHHGAGAFFR YMRQPIKQEL ICKWIEPEQL TNPKKSCNKT 250 260 270 280 290 300 FSTMHELVTH LTVEHVGGPE QSNHICFWEE CGREGKPFKA KYKLVNHIRV HTGEKPFPCP 310 320 330 340 350 360 FPGCGKVFAR SENLKIHKRT HTGEKPFKCE FEGCDRRFAN SSDRKKHMHV HTSDKPYLCK 370 380 390 400 410 420 MCDKSYTHPS SLRKHMKVHE SSSQGSQPSP AASSGYESST PPTIVSPSTE NQSSSSISPA 430 440 SSTVHHTSSH STLSSNFNEW YV

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Determination of the zebrafish forebrain: induction and patterning." Grinblat Y., Gamse J., Patel M., Sive H. Development 125:4403-4416(1998) [PubMed: 9778500] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[2]	"The genomic sequence of Danio rerio." The Danio rerio Sequencing Project at the Sanger Institute Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Tuebingen Ensembl ENSDARP00000106790.
[3]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Tuebingen Ensembl ENSDARP00000106790.
[4]	NIH - Zebrafish Gene Collection (ZGC) project Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Whole EMBL AAI15247.1.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CR388127 Genomic DNA. No translation available. AF052435 mRNA. Translation: AAC25102.1. BC115246 mRNA. Translation: AAI15247.1.
IPI	IPI00487265.
RefSeq	NP_571008.1. NM_130933.1.
UniGene	Dr.75836.
3D structure databases
HSSP	HSSP built from PDB template 1SP2 based on UniProtKB P08047.
ProteinModelPortal	O93311.
SMR	O93311. Positions 214-380.
ModBase	Search...
Protein-protein interaction databases
STRING	O93311.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSDART00000127597; ENSDARP00000106790; ENSDARG00000015567.
GeneID	30096.
KEGG	dre:30096.
Organism-specific databases
CTD	7545.
ZFIN	ZDB-GENE-000208-4. zic1.
Phylogenomic databases
HOGENOM	HBG506538.
HOVERGEN	HBG007135.
InParanoid	O93311.
OMA	MNMNMAA.
Gene expression databases
ArrayExpress	O93311.
Bgee	O93311.
Family and domain databases
InterPro	IPR007087. Znf_C2H2. IPR015880. Znf_C2H2-like. IPR013087. Znf_C2H2/integrase_DNA-bd. [Graphical view]
Gene3D	G3DSA:3.30.160.60. Znf_C2H2/integrase_DNA-bd. 4 hits.
KO	K09224.
Pfam	PF00096. zf-C2H2. 5 hits. [Graphical view]
SMART	SM00355. ZnF_C2H2. 5 hits. [Graphical view]
PROSITE	PS00028. ZINC_FINGER_C2H2_1. 3 hits. PS50157. ZINC_FINGER_C2H2_2. 4 hits. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

O93311_DANRE

Accession

Primary (citable) accession number: O93311

Entry history

Integrated into UniProtKB/TrEMBL:	November 1, 1998
Last sequence update:	November 1, 1998
Last modified:	January 25, 2012
This is version 77 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)