Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Odd-paired-like

Gene

zic1

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • brain development Source: ZFIN
  • cell proliferation in hindbrain Source: ZFIN
  • embryonic retina morphogenesis in camera-type eye Source: ZFIN
  • forebrain morphogenesis Source: ZFIN
  • fourth ventricle development Source: ZFIN
  • hindbrain development Source: ZFIN
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Odd-paired-likeImported
Submitted name:
Uncharacterized proteinImported
Submitted name:
Zic family member 1 (Odd-paired homolog, Drosophila)Imported
Gene namesi
Name:zic1Imported
Synonyms:oplImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 24

Organism-specific databases

ZFINiZDB-GENE-000208-4. zic1.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000106790.

Structurei

3D structure databases

SMRiO93311. Positions 214-380.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini269 – 29628C2H2-typeInterPro annotationAdd
BLAST
Domaini297 – 32630C2H2-typeInterPro annotationAdd
BLAST
Domaini327 – 35630C2H2-typeInterPro annotationAdd
BLAST
Domaini357 – 38428C2H2-typeInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG1721. Eukaryota.
COG5048. LUCA.
GeneTreeiENSGT00760000118771.
HOGENOMiHOG000232057.
HOVERGENiHBG007135.
KOiK09224.
OMAiNMNMAAH.
OrthoDBiEOG76472R.
PhylomeDBiO93311.
TreeFamiTF351425.

Family and domain databases

Gene3Di3.30.160.60. 4 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00096. zf-C2H2. 2 hits.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 5 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 3 hits.
PS50157. ZINC_FINGER_C2H2_2. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O93311-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLLDAGPQYP TIGVTTFGST RHHSTGEVTD REVALGINPF ADGMGAFKIN
60 70 80 90 100
HSSHDLGSGQ TAFSSQAPGY AAAALGHHHH PTHVSSYSTA AFNSTRDFLF
110 120 130 140 150
RNRGFGDATS AQHSLFASAA GSFAGPHGHS DAAGHLLFPG LHEQAATHAS
160 170 180 190 200
SNVVNSQMRL GFSGDMYGRA EQYGHVASPR SEHYASTQLH GYGPMNMNMA
210 220 230 240 250
AHHGAGAFFR YMRQPIKQEL ICKWIEPEQL TNPKKSCNKT FSTMHELVTH
260 270 280 290 300
LTVEHVGGPE QSNHICFWEE CGREGKPFKA KYKLVNHIRV HTGEKPFPCP
310 320 330 340 350
FPGCGKVFAR SENLKIHKRT HTGEKPFKCE FEGCDRRFAN SSDRKKHMHV
360 370 380 390 400
HTSDKPYLCK MCDKSYTHPS SLRKHMKVHE SSSQGSQPSP AASSGYESST
410 420 430 440
PPTIVSPSTE NQSSSSISPA SSTVHHTSSH STLSSNFNEW YV
Length:442
Mass (Da):48,388
Last modified:November 1, 1998 - v1
Checksum:i99B700134BC77E2B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR388127 Genomic DNA. No translation available.
AF052435 mRNA. Translation: AAC25102.1.
BC115246 mRNA. Translation: AAI15247.1.
RefSeqiNP_571008.1. NM_130933.1.
UniGeneiDr.75836.

Genome annotation databases

EnsembliENSDART00000127597; ENSDARP00000106790; ENSDARG00000015567.
GeneIDi30096.
KEGGidre:30096.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR388127 Genomic DNA. No translation available.
AF052435 mRNA. Translation: AAC25102.1.
BC115246 mRNA. Translation: AAI15247.1.
RefSeqiNP_571008.1. NM_130933.1.
UniGeneiDr.75836.

3D structure databases

SMRiO93311. Positions 214-380.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000106790.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000127597; ENSDARP00000106790; ENSDARG00000015567.
GeneIDi30096.
KEGGidre:30096.

Organism-specific databases

CTDi7545.
ZFINiZDB-GENE-000208-4. zic1.

Phylogenomic databases

eggNOGiKOG1721. Eukaryota.
COG5048. LUCA.
GeneTreeiENSGT00760000118771.
HOGENOMiHOG000232057.
HOVERGENiHBG007135.
KOiK09224.
OMAiNMNMAAH.
OrthoDBiEOG76472R.
PhylomeDBiO93311.
TreeFamiTF351425.

Family and domain databases

Gene3Di3.30.160.60. 4 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00096. zf-C2H2. 2 hits.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 5 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 3 hits.
PS50157. ZINC_FINGER_C2H2_2. 4 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Determination of the zebrafish forebrain: induction and patterning."
    Grinblat Y., Gamse J., Patel M., Sive H.
    Development 125:4403-4416(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  2. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: WholeImported.
  3. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: TuebingenImported.
  4. "The zebrafish reference genome sequence and its relationship to the human genome."
    Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
    , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G., Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C., Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
    Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: TuebingenImported.

Entry informationi

Entry nameiO93311_DANRE
AccessioniPrimary (citable) accession number: O93311
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: June 8, 2016
This is version 110 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.