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Protein
Submitted name:

Odd-paired-like

Gene

zic1

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • brain development Source: ZFIN
  • cell proliferation in hindbrain Source: ZFIN
  • embryonic retina morphogenesis in camera-type eye Source: ZFIN
  • forebrain morphogenesis Source: ZFIN
  • fourth ventricle development Source: ZFIN
  • hindbrain development Source: ZFIN

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Odd-paired-likeImported
Submitted name:
ZIC family member 1 (Odd-paired homolog, Drosophila)Imported
Gene namesi
Name:zic1Imported
Synonyms:oplImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 24

Organism-specific databases

ZFINiZDB-GENE-000208-4 zic1

Expressioni

Gene expression databases

BgeeiENSDARG00000015567

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000106790

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini269 – 296C2H2-typeInterPro annotationAdd BLAST28
Domaini297 – 326C2H2-typeInterPro annotationAdd BLAST30
Domaini327 – 356C2H2-typeInterPro annotationAdd BLAST30
Domaini357 – 384C2H2-typeInterPro annotationAdd BLAST28

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00900000140802
HOGENOMiHOG000232057
HOVERGENiHBG007135
KOiK09224
OMAiMGAFKIN
OrthoDBiEOG091G0M59
TreeFamiTF351425

Family and domain databases

InterProiView protein in InterPro
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
SMARTiView protein in SMART
SM00355 ZnF_C2H2, 5 hits
SUPFAMiSSF57667 SSF57667, 2 hits
PROSITEiView protein in PROSITE
PS00028 ZINC_FINGER_C2H2_1, 3 hits
PS50157 ZINC_FINGER_C2H2_2, 4 hits

Sequencei

Sequence statusi: Complete.

O93311-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLLDAGPQYP TIGVTTFGST RHHSTGEVTD REVALGINPF ADGMGAFKIN
60 70 80 90 100
HSSHDLGSGQ TAFSSQAPGY AAAALGHHHH PTHVSSYSTA AFNSTRDFLF
110 120 130 140 150
RNRGFGDATS AQHSLFASAA GSFAGPHGHS DAAGHLLFPG LHEQAATHAS
160 170 180 190 200
SNVVNSQMRL GFSGDMYGRA EQYGHVASPR SEHYASTQLH GYGPMNMNMA
210 220 230 240 250
AHHGAGAFFR YMRQPIKQEL ICKWIEPEQL TNPKKSCNKT FSTMHELVTH
260 270 280 290 300
LTVEHVGGPE QSNHICFWEE CGREGKPFKA KYKLVNHIRV HTGEKPFPCP
310 320 330 340 350
FPGCGKVFAR SENLKIHKRT HTGEKPFKCE FEGCDRRFAN SSDRKKHMHV
360 370 380 390 400
HTSDKPYLCK MCDKSYTHPS SLRKHMKVHE SSSQGSQPSP AASSGYESST
410 420 430 440
PPTIVSPSTE NQSSSSISPA SSTVHHTSSH STLSSNFNEW YV
Length:442
Mass (Da):48,388
Last modified:November 1, 1998 - v1
Checksum:i99B700134BC77E2B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR388127 Genomic DNA No translation available.
AF052435 mRNA Translation: AAC25102.1
BC115246 mRNA Translation: AAI15247.1
RefSeqiNP_571008.1, NM_130933.1
UniGeneiDr.75836

Genome annotation databases

EnsembliENSDART00000127597; ENSDARP00000106790; ENSDARG00000015567
GeneIDi30096
KEGGidre:30096

Similar proteinsi

Entry informationi

Entry nameiO93311_DANRE
AccessioniPrimary (citable) accession number: O93311
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: June 20, 2018
This is version 128 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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