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Protein
Submitted name:

Homeobox transcription factor

Gene

Hoxd-11

Organism
Ambystoma mexicanum (Axolotl)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Homeobox transcription factorImported
Gene namesi
Name:Hoxd-11Imported
OrganismiAmbystoma mexicanum (Axolotl)Imported
Taxonomic identifieri8296 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaCaudataSalamandroideaAmbystomatidaeAmbystoma

Subcellular locationi

  • Nucleus UniRule annotationSAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotationSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliO93287.
SMRiO93287. Positions 202-266.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini202 – 26261Homeobox DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains homeobox DNA-binding domain.SAAS annotation

Keywords - Domaini

HomeoboxUniRule annotationSAAS annotationImported

Phylogenomic databases

HOVERGENiHBG052048.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR021918. DUF3528.
IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR020479. Homeobox_metazoa.
IPR009057. Homeodomain-like.
[Graphical view]
PfamiPF12045. DUF3528. 1 hit.
PF00046. Homeobox. 1 hit.
[Graphical view]
PRINTSiPR00024. HOMEOBOX.
SMARTiSM00389. HOX. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O93287-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTEFDGCSNS ASNMYLPGCA YYVSPSDFSS KTSFLSQSSS CPMTFPYSSN
60 70 80 90 100
IPHVQPVREM AFREYGLERS KWQYRGSYSS YYPSEEVVHR DYIQPGNRRT
110 120 130 140 150
DVLFKSDPLC SHHGTPSASS NLYSTVGRNG VLPQEFDQFY EASQGNSYPP
160 170 180 190 200
ENGVPTEKTD SKNQPPKTAS PSPEKKVGAE GSTDSSSGEV TADKSNSSAT
210 220 230 240 250
PQRSRKKRCP YTKYQIRELE REFFFNVYIN KEKRLQLSRM LNLSDRQVKI
260 270
WFQNRRMREK KLNRDRLQYF TGNPLF
Length:276
Mass (Da):31,673
Last modified:November 1, 1998 - v1
Checksum:i5EC5DE03AF5B210F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF031481 mRNA. Translation: AAC34744.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF031481 mRNA. Translation: AAC34744.1.

3D structure databases

ProteinModelPortaliO93287.
SMRiO93287. Positions 202-266.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

HOVERGENiHBG052048.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR021918. DUF3528.
IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR020479. Homeobox_metazoa.
IPR009057. Homeodomain-like.
[Graphical view]
PfamiPF12045. DUF3528. 1 hit.
PF00046. Homeobox. 1 hit.
[Graphical view]
PRINTSiPR00024. HOMEOBOX.
SMARTiSM00389. HOX. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Regulation of HoxA expression in developing and regenerating axolotl limbs."
    Gardiner D.M., Blumberg B., Komine Y., Bryant S.V.
    Development 121:1731-1741(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "Expression of HoxD genes in developing and regenerating axolotl limbs."
    Torok M.A., Gardiner D.M., Shubin N.H., Bryant S.V.
    Dev. Biol. 200:225-233(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiO93287_AMBME
AccessioniPrimary (citable) accession number: O93287
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: May 11, 2016
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.