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Protein
Submitted name:

FTZ-F1

Gene

mdFtz-F1

Organism
Oryzias latipes (Japanese rice fish) (Japanese killifish)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi23 – 98Nuclear receptorPROSITE-ProRule annotationAdd BLAST76

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation, ReceptorUniRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
FTZ-F1Imported
Gene namesi
Name:mdFtz-F1Imported
Synonyms:nr5a1Imported
OrganismiOryzias latipes (Japanese rice fish) (Japanese killifish)Imported
Taxonomic identifieri8090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiNeoteleosteiAcanthomorphataOvalentariaAtherinomorphaeBeloniformesAdrianichthyidaeOryziinaeOryzias
Proteomesi
  • UP000001038 Componenti: Chromosome 9

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi8090.ENSORLP00000020642

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini23 – 98Nuclear receptorInterPro annotationAdd BLAST76

Sequence similaritiesi

Belongs to the nuclear hormone receptor family.UniRule annotationSAAS annotation

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG4218 Eukaryota
ENOG410YWC2 LUCA
GeneTreeiENSGT00870000136388
HOGENOMiHOG000063718
HOVERGENiHBG106677
KOiK08027
OMAiLQEPAKG
OrthoDBiEOG091G06RK
TreeFamiTF350737

Family and domain databases

Gene3Di3.30.50.101 hit
InterProiView protein in InterPro
IPR035500 NHR_like_dom_sf
IPR016355 NR5_fam
IPR000536 Nucl_hrmn_rcpt_lig-bd
IPR001723 Nuclear_hrmn_rcpt
IPR001628 Znf_hrmn_rcpt
IPR013088 Znf_NHR/GATA
PANTHERiPTHR24086 PTHR24086, 1 hit
PfamiView protein in Pfam
PF00104 Hormone_recep, 1 hit
PF00105 zf-C4, 1 hit
PIRSFiPIRSF002530 Nuc_orph_FTZ-F1, 1 hit
PRINTSiPR00398 STRDHORMONER
PR00047 STROIDFINGER
SMARTiView protein in SMART
SM00430 HOLI, 1 hit
SM00399 ZnF_C4, 1 hit
SUPFAMiSSF48508 SSF48508, 2 hits
PROSITEiView protein in PROSITE
PS00031 NUCLEAR_REC_DBD_1, 1 hit
PS51030 NUCLEAR_REC_DBD_2, 1 hit

Sequencei

Sequence statusi: Complete.

O93258-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLGDKAHGVT LKVMEYTYDE DLEELCPVCG DKVSGYHYGL LTCESCKGFF
60 70 80 90 100
KRTVQNNKRY TCAENQECKI DKTQRKRCPF CRFQKCLNVG MRLEAVRADR
110 120 130 140 150
MRGGRNKFGP MYKRDRALKQ QKKALIRSNG FKLESTALPS ASPLQTDYSF
160 170 180 190 200
TGTLHTLPTI SKSLLPSTTS SVTPTDYEAN LYGPTSLGMA MQSHVPLNPQ
210 220 230 240 250
YQYTAFPSRA IKAECPDYTS SPESLTGYPY PDVYPSASPQ PPSLPPLVLE
260 270 280 290 300
LLRCDPDELV VQNKIVAHLQ QEQSNRGRLD KPSTFSLMCR MADQTLFSIV
310 320 330 340 350
EWARSCIFFK ELRVGDQMKL LHNCWSELLV LDHIFRQVQH GKEDSILLVT
360 370 380 390 400
GQEVQLSSIL SQGEATLCSL VQRGQELAAR LRALQVDRRE IACLKFLLLF
410 420 430 440 450
NPNVKLLENQ AFVEGVQEQV NGALLEYTLT TYPQFQEKFS QLVVRLPELR
460 470 480
SLSTQAEDYL CYMHLSGEVP CNNLLIEMLH AKRACV
Length:486
Mass (Da):55,056
Last modified:November 1, 1998 - v1
Checksum:iFC404FE10DA7B71E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BAAF04046883 Genomic DNA No translation available.
BAAF04046884 Genomic DNA No translation available.
BAAF04046885 Genomic DNA No translation available.
AB016834 mRNA Translation: BAA32394.1
RefSeqiNP_001098166.1, NM_001104696.1
UniGeneiOla.73

Genome annotation databases

EnsembliENSORLT00000020643; ENSORLP00000020642; ENSORLG00000016486
GeneIDi100049260
KEGGiola:100049260

Similar proteinsi

Entry informationi

Entry nameiO93258_ORYLA
AccessioniPrimary (citable) accession number: O93258
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: April 25, 2018
This is version 129 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported