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Protein
Submitted name:

FTZ-F1

Gene

mdFtz-F1

Organism
Oryzias latipes (Japanese rice fish) (Japanese killifish)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi23 – 98Nuclear receptorPROSITE-ProRule annotationAdd BLAST76

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation, ReceptorUniRule annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
FTZ-F1Imported
Gene namesi
Name:mdFtz-F1Imported
Synonyms:nr5a1Imported
OrganismiOryzias latipes (Japanese rice fish) (Japanese killifish)
Taxonomic identifieri8090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiNeoteleosteiAcanthomorphataOvalentariaAtherinomorphaeBeloniformesAdrianichthyidaeOryziinaeOryzias
Proteomesi
  • UP000001038 Componenti: Chromosome 9

Subcellular locationi

  • Nucleus PROSITE-ProRule annotationSAAS annotation

GO - Cellular componenti

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi8090.ENSORLP00000020642.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini23 – 98Nuclear receptor DNA-bindingInterPro annotationAdd BLAST76

Sequence similaritiesi

Belongs to the nuclear hormone receptor family.UniRule annotationSAAS annotation

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG4218. Eukaryota.
ENOG410YWC2. LUCA.
GeneTreeiENSGT00760000118887.
HOGENOMiHOG000063718.
HOVERGENiHBG106677.
KOiK08027.
OMAiYTCAENQ.
OrthoDBiEOG091G06RK.
TreeFamiTF350737.

Family and domain databases

Gene3Di1.10.565.10. 1 hit.
3.30.50.10. 1 hit.
InterProiView protein in InterPro
IPR016355. NR5_fam.
IPR000536. Nucl_hrmn_rcpt_lig-bd.
IPR001723. Nuclear_hrmn_rcpt.
IPR001628. Znf_hrmn_rcpt.
IPR013088. Znf_NHR/GATA.
PANTHERiPTHR24086. PTHR24086. 1 hit.
PfamiView protein in Pfam
PF00104. Hormone_recep. 1 hit.
PF00105. zf-C4. 1 hit.
PIRSFiPIRSF002530. Nuc_orph_FTZ-F1. 1 hit.
PRINTSiPR00398. STRDHORMONER.
PR00047. STROIDFINGER.
SMARTiView protein in SMART
SM00430. HOLI. 1 hit.
SM00399. ZnF_C4. 1 hit.
SUPFAMiSSF48508. SSF48508. 2 hits.
PROSITEiView protein in PROSITE
PS00031. NUCLEAR_REC_DBD_1. 1 hit.
PS51030. NUCLEAR_REC_DBD_2. 1 hit.

Sequencei

Sequence statusi: Complete.

O93258-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLGDKAHGVT LKVMEYTYDE DLEELCPVCG DKVSGYHYGL LTCESCKGFF
60 70 80 90 100
KRTVQNNKRY TCAENQECKI DKTQRKRCPF CRFQKCLNVG MRLEAVRADR
110 120 130 140 150
MRGGRNKFGP MYKRDRALKQ QKKALIRSNG FKLESTALPS ASPLQTDYSF
160 170 180 190 200
TGTLHTLPTI SKSLLPSTTS SVTPTDYEAN LYGPTSLGMA MQSHVPLNPQ
210 220 230 240 250
YQYTAFPSRA IKAECPDYTS SPESLTGYPY PDVYPSASPQ PPSLPPLVLE
260 270 280 290 300
LLRCDPDELV VQNKIVAHLQ QEQSNRGRLD KPSTFSLMCR MADQTLFSIV
310 320 330 340 350
EWARSCIFFK ELRVGDQMKL LHNCWSELLV LDHIFRQVQH GKEDSILLVT
360 370 380 390 400
GQEVQLSSIL SQGEATLCSL VQRGQELAAR LRALQVDRRE IACLKFLLLF
410 420 430 440 450
NPNVKLLENQ AFVEGVQEQV NGALLEYTLT TYPQFQEKFS QLVVRLPELR
460 470 480
SLSTQAEDYL CYMHLSGEVP CNNLLIEMLH AKRACV
Length:486
Mass (Da):55,056
Last modified:November 1, 1998 - v1
Checksum:iFC404FE10DA7B71E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BAAF04046883 Genomic DNA. No translation available.
BAAF04046884 Genomic DNA. No translation available.
BAAF04046885 Genomic DNA. No translation available.
AB016834 mRNA. Translation: BAA32394.1.
RefSeqiNP_001098166.1. NM_001104696.1.
UniGeneiOla.73.

Genome annotation databases

EnsembliENSORLT00000020643; ENSORLP00000020642; ENSORLG00000016486.
GeneIDi100049260.
KEGGiola:100049260.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BAAF04046883 Genomic DNA. No translation available.
BAAF04046884 Genomic DNA. No translation available.
BAAF04046885 Genomic DNA. No translation available.
AB016834 mRNA. Translation: BAA32394.1.
RefSeqiNP_001098166.1. NM_001104696.1.
UniGeneiOla.73.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi8090.ENSORLP00000020642.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSORLT00000020643; ENSORLP00000020642; ENSORLG00000016486.
GeneIDi100049260.
KEGGiola:100049260.

Organism-specific databases

CTDi2516.

Phylogenomic databases

eggNOGiKOG4218. Eukaryota.
ENOG410YWC2. LUCA.
GeneTreeiENSGT00760000118887.
HOGENOMiHOG000063718.
HOVERGENiHBG106677.
KOiK08027.
OMAiYTCAENQ.
OrthoDBiEOG091G06RK.
TreeFamiTF350737.

Family and domain databases

Gene3Di1.10.565.10. 1 hit.
3.30.50.10. 1 hit.
InterProiView protein in InterPro
IPR016355. NR5_fam.
IPR000536. Nucl_hrmn_rcpt_lig-bd.
IPR001723. Nuclear_hrmn_rcpt.
IPR001628. Znf_hrmn_rcpt.
IPR013088. Znf_NHR/GATA.
PANTHERiPTHR24086. PTHR24086. 1 hit.
PfamiView protein in Pfam
PF00104. Hormone_recep. 1 hit.
PF00105. zf-C4. 1 hit.
PIRSFiPIRSF002530. Nuc_orph_FTZ-F1. 1 hit.
PRINTSiPR00398. STRDHORMONER.
PR00047. STROIDFINGER.
SMARTiView protein in SMART
SM00430. HOLI. 1 hit.
SM00399. ZnF_C4. 1 hit.
SUPFAMiSSF48508. SSF48508. 2 hits.
PROSITEiView protein in PROSITE
PS00031. NUCLEAR_REC_DBD_1. 1 hit.
PS51030. NUCLEAR_REC_DBD_2. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiO93258_ORYLA
AccessioniPrimary (citable) accession number: O93258
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: March 15, 2017
This is version 119 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.