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Protein
Submitted name:

Capsid

Gene
N/A
Organism
Foot-and-mouth disease virus
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
CapsidImported
OrganismiFoot-and-mouth disease virusImported
Taxonomic identifieri12110 [NCBI]
Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stagePicornaviralesPicornaviridaeAphthovirus

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Capsid proteinSAAS annotation, Virion

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1BBTX-ray2.6041-85[»]
ProteinModelPortaliO90754.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO90754.

Family & Domainsi

Family and domain databases

Gene3Di2.60.120.20. 3 hits.
4.10.90.10. 1 hit.
InterProiIPR015031. Capsid_VP4_Picornavir.
IPR004080. FMDV_VP1_coat.
IPR001676. Picornavirus_capsid.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00073. Rhv. 2 hits.
PF08935. VP4_2. 1 hit.
[Graphical view]
PRINTSiPR01542. FMDVP1COAT.

Sequencei

Sequence statusi: Fragment.

O90754-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
GAGQSSPATG SQNQSGNTGS IINNYYMQQY QNSMDTQLGD NAISGGSNEG
60 70 80 90 100
STDTTSTHTN NTQNNDWFSK LAQSAFSGLV GALLADKKTE ETTLLEDRIV
110 120 130 140 150
TTSHGTTTST TQSSVGVTYG YALTDKFLPG PNTNGLETRV EQAERFFKHK
160 170 180 190 200
LFDWTLDQQF GTTYVLELPT DHKGIYGQLV DSHAYIRNGW DVQVSATATQ
210 220 230 240 250
FNGGCLLVAM VPELCKLDDR EKYQLTLFPH QFLNPRTNTT AHIQVPYLGV
260 270 280 290 300
DRHDQGTRHK AWTLVVMVLA PYTNDQTIGS TKAEVYVNIA PTNVYVAGEK
310 320 330 340 350
PVKQGILPVA VSDGYGGFQN TDPKTSDPVY GHVYNPGRTL YPGRFTNLLD
360 370 380 390 400
VAEACPTLLD FNGVPYVQTQ SNSGSKVLAC FDLAFGHKNM KNTYMSGLAQ
410 420 430 440 450
YFAQYSGTLN LHFMYTGPTN NKAKYMVAYI PPGTHPLPET PEMASHCYHA
460 470 480 490 500
EWDTGLNSTF TFTVPYFSAA DYAYTYADEP EQASVQGWVG VYQITDTHEK
510 520 530 540 550
DGAVIVTVSA GPDFEFRMPI SPSRQTTSAG EGADPVTTDA SAHGGDTRTT
560 570 580 590 600
RRAHTDVTFL LDRFTLVGKT NDNKLVLDLL STKEKSLVGA LLRAATYYFS
610 620 630 640 650
DLEVACVGTN AWVGWTPNGS PVLTEVGDNQ VVFSRRGTTR FALPYTAPHR
660 670 680 690 700
VLATVYNGDC KYKPTGTAPR ENIRGDLATL AARIASETHI PTTFNYGMIY
710 720 730 740
TQAEVDVYLR MKRAELYCPR PVLTHYDHNG RDRYKTTLVK PAKQLS
Length:746
Mass (Da):81,990
Last modified:November 1, 1998 - v1
Checksum:iF4E5D8C13FC8EC86
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported
Non-terminal residuei746 – 7461Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z98203 Genomic RNA. Translation: CAB10893.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z98203 Genomic RNA. Translation: CAB10893.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1BBTX-ray2.6041-85[»]
ProteinModelPortaliO90754.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Miscellaneous databases

EvolutionaryTraceiO90754.

Family and domain databases

Gene3Di2.60.120.20. 3 hits.
4.10.90.10. 1 hit.
InterProiIPR015031. Capsid_VP4_Picornavir.
IPR004080. FMDV_VP1_coat.
IPR001676. Picornavirus_capsid.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00073. Rhv. 2 hits.
PF08935. VP4_2. 1 hit.
[Graphical view]
PRINTSiPR01542. FMDVP1COAT.
ProtoNetiSearch...

Publicationsi

  1. "Methods used in the structure determination of foot-and-mouth disease virus."
    Fry E., Acharya R., Stuart D.
    Acta Crystallogr. A 49 ( Pt 1):45-55(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.60 ANGSTROMS) OF 1-85.
  2. "Nucleotide sequence of the capsid-coding region of foot-and-mouth disease virus type SAT 1."
    Knowles N.J., Ansell D.M., Samuel A.R.
    Submitted (JUL-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BOT/1/68Imported.

Entry informationi

Entry nameiO90754_9PICO
AccessioniPrimary (citable) accession number: O90754
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: February 4, 2015
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.