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O89016

- ABCD4_MOUSE

UniProt

O89016 - ABCD4_MOUSE

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Protein

ATP-binding cassette sub-family D member 4

Gene
Abcd4, Pxmp1l
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

May be involved in intracellular processing of vitamin B12 (cobalamin). Could play a role in the lysosomal release of vitamin B12 into the cytoplasm By similarity.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi421 – 4288ATP Reviewed prediction

GO - Molecular functioni

  1. ATPase activity, coupled to transmembrane movement of substances Source: InterPro
  2. ATP binding Source: UniProtKB-KW

GO - Biological processi

  1. cobalamin metabolic process Source: UniProtKB
Complete GO annotation...

Keywords - Biological processi

Transport

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
ATP-binding cassette sub-family D member 4
Alternative name(s):
PMP70-related protein
Short name:
P70R
Peroxisomal membrane protein 1-like
Short name:
PXMP1-L
Peroxisomal membrane protein 69
Short name:
PMP69
Gene namesi
Name:Abcd4
Synonyms:Pxmp1l
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 12

Organism-specific databases

MGIiMGI:1349217. Abcd4.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei43 – 6321Helical; Reviewed predictionAdd
BLAST
Transmembranei76 – 9621Helical; Reviewed predictionAdd
BLAST
Transmembranei190 – 21021Helical; Reviewed predictionAdd
BLAST
Transmembranei279 – 29921Helical; Reviewed predictionAdd
BLAST
Transmembranei314 – 33421Helical; Reviewed predictionAdd
BLAST

GO - Cellular componenti

  1. endoplasmic reticulum membrane Source: UniProtKB
  2. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Membrane, Peroxisome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 606606ATP-binding cassette sub-family D member 4PRO_0000093313Add
BLAST

Proteomic databases

MaxQBiO89016.
PaxDbiO89016.
PRIDEiO89016.

PTM databases

PhosphoSiteiO89016.

Expressioni

Gene expression databases

BgeeiO89016.
GenevestigatoriO89016.

Interactioni

Subunit structurei

Homodimer or heterodimer Reviewed prediction.

Structurei

3D structure databases

ProteinModelPortaliO89016.
SMRiO89016. Positions 271-595.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini39 – 332294ABC transmembrane type-1Add
BLAST
Domaini389 – 603215ABC transporterAdd
BLAST

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiCOG4178.
GeneTreeiENSGT00390000003950.
HOGENOMiHOG000007546.
HOVERGENiHBG106060.
InParanoidiO89016.
KOiK05678.
OMAiIAGIWPY.
OrthoDBiEOG72RMXS.
TreeFamiTF105205.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR003593. AAA+_ATPase.
IPR011527. ABC1_TM_dom.
IPR010509. ABC_Peroxi_TM.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF06472. ABC_membrane_2. 1 hit.
PF00005. ABC_tran. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
SSF90123. SSF90123. 1 hit.
PROSITEiPS50929. ABC_TM1F. 1 hit.
PS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O89016-1 [UniParc]FASTAAdd to Basket

« Hide

MAVPGPTARA GARPRLDLQL VQRFVRIQKV FFPSWSSQNV LMFMTLLCVT    50
LLEQLVIYQV GLIPSQYYGV LGNKDLDGFK ALTLLAVTLI VLNSTLKSFD 100
QFTCNLLYVS WRKDLTEHLH HLYFRARVYY TLNVLRDDID NPDQRISQDV 150
ERFCRQLSSV TSKLIISPFT LTYYTYQCFQ STGWLGPVSI FGYFIVGTMV 200
NKTLMGPIVT KLVQQEKLEG DFRFKHMQIR VNAEPAAFYR AGLVEHMRTD 250
RRLQRLLQTQ RELMSRELWL YIGINTFDYL GSILSYVVIA IPIFSGVYGD 300
LSPTELSTLV SKNAFVCIYL ISCFTQLIDL STTLSDVAGY THRIGELQEA 350
LLDMSRKSQD CEALGESEWD LDKTPGCPTT EPSDTAFLLD RVSILAPSSD 400
KPLIKDLSLK ICEGQSLLIT GNTGTGKTSL LRVLGGLWEG MKGSVQMLAD 450
FGPHGVLFLP QKPFFTDGTL REQVIYPLKE IYPDSGSADD ERIVRFLELA 500
GLSSLVARTG GLDQQVDWNW YDVLSPGEMQ RLSFARLFYL QPKYAVLDEA 550
TSALTEEAES ELYRIGQQLG MTFISVGHRP SLEKFHSWVL RLHGGGSWEL 600
TRIKLE 606
Length:606
Mass (Da):68,583
Last modified:June 28, 2011 - v2
Checksum:iF93CF046ADA776A0
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti43 – 431F → L in CAA04570. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ001166 mRNA. Translation: CAA04570.1.
AC110564 Genomic DNA. No translation available.
CCDSiCCDS26047.1.
RefSeqiNP_033018.2. NM_008992.2.
UniGeneiMm.229109.

Genome annotation databases

EnsembliENSMUST00000021666; ENSMUSP00000021666; ENSMUSG00000021240.
GeneIDi19300.
KEGGimmu:19300.
UCSCiuc007ofo.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ001166 mRNA. Translation: CAA04570.1 .
AC110564 Genomic DNA. No translation available.
CCDSi CCDS26047.1.
RefSeqi NP_033018.2. NM_008992.2.
UniGenei Mm.229109.

3D structure databases

ProteinModelPortali O89016.
SMRi O89016. Positions 271-595.
ModBasei Search...
MobiDBi Search...

PTM databases

PhosphoSitei O89016.

Proteomic databases

MaxQBi O89016.
PaxDbi O89016.
PRIDEi O89016.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000021666 ; ENSMUSP00000021666 ; ENSMUSG00000021240 .
GeneIDi 19300.
KEGGi mmu:19300.
UCSCi uc007ofo.2. mouse.

Organism-specific databases

CTDi 5826.
MGIi MGI:1349217. Abcd4.

Phylogenomic databases

eggNOGi COG4178.
GeneTreei ENSGT00390000003950.
HOGENOMi HOG000007546.
HOVERGENi HBG106060.
InParanoidi O89016.
KOi K05678.
OMAi IAGIWPY.
OrthoDBi EOG72RMXS.
TreeFami TF105205.

Miscellaneous databases

NextBioi 296249.
PROi O89016.
SOURCEi Search...

Gene expression databases

Bgeei O89016.
Genevestigatori O89016.

Family and domain databases

Gene3Di 3.40.50.300. 2 hits.
InterProi IPR003593. AAA+_ATPase.
IPR011527. ABC1_TM_dom.
IPR010509. ABC_Peroxi_TM.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
[Graphical view ]
Pfami PF06472. ABC_membrane_2. 1 hit.
PF00005. ABC_tran. 1 hit.
[Graphical view ]
SMARTi SM00382. AAA. 1 hit.
[Graphical view ]
SUPFAMi SSF52540. SSF52540. 1 hit.
SSF90123. SSF90123. 1 hit.
PROSITEi PS50929. ABC_TM1F. 1 hit.
PS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The mouse gene encoding the peroxisomal membrane protein 1-like protein (PXMP1-L): cDNA cloning, genomic organization and comparative expression studies."
    Holzinger A., Muntau A., Mayerhofer P., Kammerer S., Albet S., Bugaut M., Roscher A.A.
    FEBS Lett. 433:179-183(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6J.

Entry informationi

Entry nameiABCD4_MOUSE
AccessioniPrimary (citable) accession number: O89016
Secondary accession number(s): E9QKU3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: June 28, 2011
Last modified: July 9, 2014
This is version 107 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi