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Protein

Amyloid beta A4 precursor protein-binding family A member 3

Gene

Apba3

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

May modulate processing of the beta-amyloid precursor protein (APP) and hence formation of beta-APP. May enhance the activity of HIF1A in macrophages by inhibiting the activity of HIF1AN (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

  • in utero embryonic development Source: MGI
  • negative regulation of catalytic activity Source: MGI
  • protein transport Source: UniProtKB-KW
  • regulation of gene expression Source: MGI
  • synaptic transmission Source: MGI
Complete GO annotation...

Keywords - Biological processi

Protein transport, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Amyloid beta A4 precursor protein-binding family A member 3
Alternative name(s):
Adapter protein X11gamma
Neuron-specific X11L2 protein
Neuronal Munc18-1-interacting protein 3
Short name:
Mint-3
Gene namesi
Name:Apba3
Synonyms:Mint3
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 10

Organism-specific databases

MGIiMGI:1888527. Apba3.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 571571Amyloid beta A4 precursor protein-binding family A member 3PRO_0000064621Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei1 – 11N-acetylmethionineBy similarity
Modified residuei168 – 1681PhosphoserineBy similarity
Modified residuei369 – 3691PhosphoserineBy similarity

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

EPDiO88888.
PaxDbiO88888.
PeptideAtlasiO88888.
PRIDEiO88888.

PTM databases

iPTMnetiO88888.
PhosphoSiteiO88888.

Expressioni

Tissue specificityi

Ubiquitous.

Gene expression databases

BgeeiO88888.
GenevisibleiO88888. MM.

Interactioni

Subunit structurei

Binds to the cytoplasmic domain of amyloid protein (APP). Interacts with HIF1AN (via N-terminus) (By similarity).By similarity

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000050995.

Structurei

3D structure databases

ProteinModelPortaliO88888.
SMRiO88888. Positions 208-571.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini214 – 378165PIDPROSITE-ProRule annotationAdd
BLAST
Domaini391 – 47787PDZ 1PROSITE-ProRule annotationAdd
BLAST
Domaini482 – 55675PDZ 2PROSITE-ProRule annotationAdd
BLAST

Domaini

Composed of an N-terminal domain, a middle phosphotyrosine-binding domain (PID/PTB) that mediates binding with the cytoplasmic domain of the beta-amyloid precursor protein, and two C-terminal PDZ domains thought to attach proteins to the plasma membrane.

Sequence similaritiesi

Contains 2 PDZ (DHR) domains.PROSITE-ProRule annotation
Contains 1 PID domain.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG3605. Eukaryota.
ENOG410XSBD. LUCA.
GeneTreeiENSGT00390000013578.
HOGENOMiHOG000033981.
HOVERGENiHBG050523.
InParanoidiO88888.
OMAiPGPCDHE.
OrthoDBiEOG78PV8H.
PhylomeDBiO88888.
TreeFamiTF315245.

Family and domain databases

Gene3Di2.30.29.30. 1 hit.
2.30.42.10. 2 hits.
InterProiIPR030531. Apba3.
IPR001478. PDZ.
IPR011993. PH_dom-like.
IPR006020. PTB/PI_dom.
[Graphical view]
PANTHERiPTHR12345:SF9. PTHR12345:SF9. 1 hit.
PfamiPF00595. PDZ. 2 hits.
PF00640. PID. 1 hit.
[Graphical view]
SMARTiSM00228. PDZ. 2 hits.
SM00462. PTB. 1 hit.
[Graphical view]
SUPFAMiSSF50156. SSF50156. 2 hits.
SSF50729. SSF50729. 1 hit.
PROSITEiPS50106. PDZ. 2 hits.
PS01179. PID. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O88888-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEFLPGPQHP PGPPTMDLEE PKGPEVPSEN HPSNTQSALG PGGPVTLSEM
60 70 80 90 100
ELDTSSVQEL VQQLEALPSD LGGPFPDGAP CPLHIATGQG LATQENPDAG
110 120 130 140 150
GLLSAEAGGD DLLGLLRDEA SSPAQSVPQD PAQTAPRLLQ PPEDPDGDPG
160 170 180 190 200
WMEGASAEPA DSRSSSSSPE PWLETAPLVT QQEPPVGTQS RETLASCPAV
210 220 230 240 250
TEVPGPCGPE ELMDGVIFGA KYLGSTQLLS ERSPAPSTRM GQAQEAMDRV
260 270 280 290 300
KAPEGETQPM VEVDIFISTK RVKVLAADSQ DALMDHALQT ISYIADIGPV
310 320 330 340 350
LVLMARRRLA RRTTPQDRQR RLYKMLCHVF HSEDAQLIAQ AIGQAFSIAY
360 370 380 390 400
SQFLQENRID PSQVGTQPST AASHPHNGDL DHFCNSQNCR EVCIQKRPGE
410 420 430 440 450
GLGVALVESG WGSLLPTAVI ANLLHGGPAE RCGALSIGDR VTAINGTSLV
460 470 480 490 500
GLSLAACQAA VREVRRLSSV TLSIIHCPPV TTAVIRRPHV REQLGFCVED
510 520 530 540 550
GIICSLLRGG AAERGGVRVG HRIIEVNGQS VVAMPHARII QLLTETREIH
560 570
IKTMPAATYR LLTGQEQPVY L
Length:571
Mass (Da):60,718
Last modified:November 1, 1998 - v1
Checksum:i1BBAC7BD1CCF3BCA
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti238 – 2381T → A in BAC32549 (PubMed:16141072).Curated
Sequence conflicti381 – 3811D → G in BAC32549 (PubMed:16141072).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF070975 mRNA. Translation: AAC78837.1.
AK045965 mRNA. Translation: BAC32549.1.
AK170182 mRNA. Translation: BAE41620.1.
CH466553 Genomic DNA. Translation: EDL31434.1.
BC005423 mRNA. Translation: AAH05423.1.
BC009666 mRNA. Translation: AAH09666.1.
CCDSiCCDS24050.1.
RefSeqiNP_061228.1. NM_018758.2.
XP_006513968.1. XM_006513905.1.
XP_006513969.1. XM_006513906.2.
UniGeneiMm.293931.

Genome annotation databases

EnsembliENSMUST00000057798; ENSMUSP00000050995; ENSMUSG00000004931.
GeneIDi57267.
KEGGimmu:57267.
UCSCiuc007ggz.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF070975 mRNA. Translation: AAC78837.1.
AK045965 mRNA. Translation: BAC32549.1.
AK170182 mRNA. Translation: BAE41620.1.
CH466553 Genomic DNA. Translation: EDL31434.1.
BC005423 mRNA. Translation: AAH05423.1.
BC009666 mRNA. Translation: AAH09666.1.
CCDSiCCDS24050.1.
RefSeqiNP_061228.1. NM_018758.2.
XP_006513968.1. XM_006513905.1.
XP_006513969.1. XM_006513906.2.
UniGeneiMm.293931.

3D structure databases

ProteinModelPortaliO88888.
SMRiO88888. Positions 208-571.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000050995.

PTM databases

iPTMnetiO88888.
PhosphoSiteiO88888.

Proteomic databases

EPDiO88888.
PaxDbiO88888.
PeptideAtlasiO88888.
PRIDEiO88888.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000057798; ENSMUSP00000050995; ENSMUSG00000004931.
GeneIDi57267.
KEGGimmu:57267.
UCSCiuc007ggz.2. mouse.

Organism-specific databases

CTDi9546.
MGIiMGI:1888527. Apba3.

Phylogenomic databases

eggNOGiKOG3605. Eukaryota.
ENOG410XSBD. LUCA.
GeneTreeiENSGT00390000013578.
HOGENOMiHOG000033981.
HOVERGENiHBG050523.
InParanoidiO88888.
OMAiPGPCDHE.
OrthoDBiEOG78PV8H.
PhylomeDBiO88888.
TreeFamiTF315245.

Miscellaneous databases

ChiTaRSiApba3. mouse.
PROiO88888.
SOURCEiSearch...

Gene expression databases

BgeeiO88888.
GenevisibleiO88888. MM.

Family and domain databases

Gene3Di2.30.29.30. 1 hit.
2.30.42.10. 2 hits.
InterProiIPR030531. Apba3.
IPR001478. PDZ.
IPR011993. PH_dom-like.
IPR006020. PTB/PI_dom.
[Graphical view]
PANTHERiPTHR12345:SF9. PTHR12345:SF9. 1 hit.
PfamiPF00595. PDZ. 2 hits.
PF00640. PID. 1 hit.
[Graphical view]
SMARTiSM00228. PDZ. 2 hits.
SM00462. PTB. 1 hit.
[Graphical view]
SUPFAMiSSF50156. SSF50156. 2 hits.
SSF50729. SSF50729. 1 hit.
PROSITEiPS50106. PDZ. 2 hits.
PS01179. PID. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Identification of an evolutionarily conserved heterotrimeric protein complex involved in protein targeting."
    Borg J.-P., Straight S.W., Kaech S.M., de Taddeo-Borg M., Kroon D.E., Karnak D., Turner R.S., Kim S.K., Margolis B.
    J. Biol. Chem. 273:31633-31636(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  2. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J and NOD.
    Tissue: Corpora quadrigemina and Dendritic cell.
  3. Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
    Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Mammary gland.
  5. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Brown adipose tissue.

Entry informationi

Entry nameiAPBA3_MOUSE
AccessioniPrimary (citable) accession number: O88888
Secondary accession number(s): Q3TDI1, Q8BR09
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: November 1, 1998
Last modified: July 6, 2016
This is version 125 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.