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Protein

C-type lectin domain family 11 member A

Gene

Clec11a

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Stimulates the proliferation and differentiation of hematopoietic precursor cells from various lineages, including erythrocytes, lymphocytes, granulocytes and macrophages. Acts synergistically with other cytokines, including IL-3, GCSF, GMCSF and FLT3 ligand. Suppresses SCF-stimulated erythrocyte proliferation (By similarity).By similarity

GO - Molecular functioni

  • carbohydrate binding Source: UniProtKB
  • growth factor activity Source: UniProtKB

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Growth factor

Keywords - Ligandi

Lectin

Names & Taxonomyi

Protein namesi
Recommended name:
C-type lectin domain family 11 member A
Alternative name(s):
Lymphocyte secreted C-type lectin
Stem cell growth factor
Gene namesi
Name:Clec11a
Synonyms:Scgf
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 1

Organism-specific databases

RGDi3627. Clec11a.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121By similarityAdd
BLAST
Chaini22 – 328307C-type lectin domain family 11 member APRO_0000017470Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi209 ↔ 324PROSITE-ProRule annotation
Disulfide bondi301 ↔ 316PROSITE-ProRule annotation

Post-translational modificationi

O-glycosylated. Probably sulfated on the O-glycans (By similarity).By similarity

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PaxDbiO88201.
PRIDEiO88201.

PTM databases

PhosphoSiteiO88201.

Expressioni

Gene expression databases

GenevisibleiO88201. RN.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000025949.

Structurei

3D structure databases

ProteinModelPortaliO88201.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini188 – 325138C-type lectinPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 C-type lectin domain.PROSITE-ProRule annotation

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410IS3S. Eukaryota.
ENOG410YHP3. LUCA.
GeneTreeiENSGT00610000086061.
HOGENOMiHOG000273889.
HOVERGENiHBG052365.
InParanoidiO88201.
KOiK17521.
OMAiFAWHRSP.
OrthoDBiEOG754HQT.
PhylomeDBiO88201.
TreeFamiTF330481.

Family and domain databases

Gene3Di3.10.100.10. 1 hit.
InterProiIPR001304. C-type_lectin.
IPR016186. C-type_lectin-like.
IPR018378. C-type_lectin_CS.
IPR016187. C-type_lectin_fold.
[Graphical view]
PfamiPF00059. Lectin_C. 1 hit.
[Graphical view]
SMARTiSM00034. CLECT. 1 hit.
[Graphical view]
SUPFAMiSSF56436. SSF56436. 1 hit.
PROSITEiPS00615. C_TYPE_LECTIN_1. 1 hit.
PS50041. C_TYPE_LECTIN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O88201-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQAAWLLGAL LVPHLLSFGH GARGHGKEWE GVWGGALEEE RDRESLMLKN
60 70 80 90 100
LQEALGLPTG VGNKDNLAEN SEGKEVWEAT ETQGEEEEEE TTTTPSSSPT
110 120 130 140 150
PFPSPSPTSE DTVTYILGRL ASLDAGLHQL HIRLHVLDTR VVELTQGLRR
160 170 180 190 200
LRDAASDTRD SVQALKEVQV RSEQEHGRLE GCLKGLRLGH KCFLLSRDFE
210 220 230 240 250
TQAAAQARCK ARGGSLAQPA DRQQMDALSR YLRAALAPYN WPVWLGVHDR
260 270 280 290 300
RSEGLYLFEN GQRVSFFAWH RALSPESGAQ PSAASHPLSP DQPNGGILEN
310 320
CVAQASDDGS WWDHDCERRL YFVCEFPF
Length:328
Mass (Da):36,388
Last modified:November 1, 1998 - v1
Checksum:iC115188AC23D6257
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB009246 mRNA. Translation: BAA32406.1.
BC090344 mRNA. Translation: AAH90344.1.
RefSeqiNP_001012477.1. NM_001012459.1.
UniGeneiRn.162423.

Genome annotation databases

EnsembliENSRNOT00000025949; ENSRNOP00000025949; ENSRNOG00000019138.
GeneIDi29313.
KEGGirno:29313.
UCSCiRGD:3627. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB009246 mRNA. Translation: BAA32406.1.
BC090344 mRNA. Translation: AAH90344.1.
RefSeqiNP_001012477.1. NM_001012459.1.
UniGeneiRn.162423.

3D structure databases

ProteinModelPortaliO88201.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000025949.

PTM databases

PhosphoSiteiO88201.

Proteomic databases

PaxDbiO88201.
PRIDEiO88201.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000025949; ENSRNOP00000025949; ENSRNOG00000019138.
GeneIDi29313.
KEGGirno:29313.
UCSCiRGD:3627. rat.

Organism-specific databases

CTDi6320.
RGDi3627. Clec11a.

Phylogenomic databases

eggNOGiENOG410IS3S. Eukaryota.
ENOG410YHP3. LUCA.
GeneTreeiENSGT00610000086061.
HOGENOMiHOG000273889.
HOVERGENiHBG052365.
InParanoidiO88201.
KOiK17521.
OMAiFAWHRSP.
OrthoDBiEOG754HQT.
PhylomeDBiO88201.
TreeFamiTF330481.

Miscellaneous databases

NextBioi608754.
PROiO88201.

Gene expression databases

GenevisibleiO88201. RN.

Family and domain databases

Gene3Di3.10.100.10. 1 hit.
InterProiIPR001304. C-type_lectin.
IPR016186. C-type_lectin-like.
IPR018378. C-type_lectin_CS.
IPR016187. C-type_lectin_fold.
[Graphical view]
PfamiPF00059. Lectin_C. 1 hit.
[Graphical view]
SMARTiSM00034. CLECT. 1 hit.
[Graphical view]
SUPFAMiSSF56436. SSF56436. 1 hit.
PROSITEiPS00615. C_TYPE_LECTIN_1. 1 hit.
PS50041. C_TYPE_LECTIN_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Isolation and characterization of a cDNA for human, mouse, and rat full-length stem cell growth factor, a new member of C-type lectin superfamily."
    Mio H., Kagami N., Yokokawa S., Kawai H., Nakagawa S., Takeuchi K., Sekine S., Hiraoka A.
    Biochem. Biophys. Res. Commun. 249:124-130(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Tissue: BoneImported.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Ovary.

Entry informationi

Entry nameiCLC11_RAT
AccessioniPrimary (citable) accession number: O88201
Secondary accession number(s): Q5EAN4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 22, 2003
Last sequence update: November 1, 1998
Last modified: November 11, 2015
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.