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Protein
Submitted name:

Putative transcriptional regulator

Gene

SCO1616

Organism
Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Putative transcriptional regulatorImported
Gene namesi
Ordered Locus Names:SCO1616Imported
OrganismiStreptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)Imported
Taxonomic identifieri100226 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaStreptomycetalesStreptomycetaceaeStreptomycesStreptomyces albidoflavus group
Proteomesi
  • UP000001973 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi100226.SCO1616.

Structurei

3D structure databases

ProteinModelPortaliO88073.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini37 – 9458HTH lysR-type DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH lysR-type DNA-binding domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG4107W24. Bacteria.
COG0583. LUCA.
HOGENOMiHOG000233518.
InParanoidiO88073.
OMAiMERQLGV.
OrthoDBiEOG6GR36X.
PhylomeDBiO88073.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O88073-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGSGAGSSTN GGTGGGTEGG HDTRARQVAG SLAHRVPDLG AMELLLAVAR
60 70 80 90 100
LGSLGGAARE LGITQPAASS RIRSMERQLG VALVDRSPRG SRLTDAGALV
110 120 130 140 150
TDWARRIVEA AEAFDAGAQA LRDRRDSRLR VAASMTIAEY LLPGWLVALR
160 170 180 190 200
AQLPDTAVSL LAGNSAAVAE RLLADDADLG FVEGVSVPTG LDSAVIGHDR
210 220 230 240 250
LIVVTAPGHP WARRRRPLEA AELAATPLIL REKGSGTRQV LDAALGGLAR
260 270 280 290 300
PLIELSSTTA VKAAAVGGAG PSVLSELAVG EELTTRRLVS VPVADVVLAR
310 320
DLRAVWPTGH RPTGPARQLL SLTRA
Length:325
Mass (Da):33,489
Last modified:November 1, 1998 - v1
Checksum:iE864048EDBDC2AE5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL939109 Genomic DNA. Translation: CAA20827.1.
PIRiT36851.
RefSeqiNP_625892.1. NC_003888.3.
WP_003977210.1. NC_003888.3.

Genome annotation databases

EnsemblBacteriaiCAA20827; CAA20827; CAA20827.
GeneIDi1097047.
KEGGisco:SCO1616.
PATRICi23732832. VBIStrCoe124346_1630.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL939109 Genomic DNA. Translation: CAA20827.1.
PIRiT36851.
RefSeqiNP_625892.1. NC_003888.3.
WP_003977210.1. NC_003888.3.

3D structure databases

ProteinModelPortaliO88073.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi100226.SCO1616.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAA20827; CAA20827; CAA20827.
GeneIDi1097047.
KEGGisco:SCO1616.
PATRICi23732832. VBIStrCoe124346_1630.

Phylogenomic databases

eggNOGiENOG4107W24. Bacteria.
COG0583. LUCA.
HOGENOMiHOG000233518.
InParanoidiO88073.
OMAiMERQLGV.
OrthoDBiEOG6GR36X.
PhylomeDBiO88073.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-471 / A3(2) / M145Imported.

Entry informationi

Entry nameiO88073_STRCO
AccessioniPrimary (citable) accession number: O88073
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: March 16, 2016
This is version 91 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.