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Protein

50S ribosomal protein L20

Gene

rplT

Organism
Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L20
Gene namesi
Name:rplT
Ordered Locus Names:SCO1598
ORF Names:SCI35.20c
OrganismiStreptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Taxonomic identifieri100226 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaStreptomycetalesStreptomycetaceaeStreptomycesStreptomyces albidoflavus group
Proteomesi
  • UP000001973 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 12712750S ribosomal protein L20PRO_0000177236Add
BLAST

Proteomic databases

PRIDEiO88058.

Interactioni

Protein-protein interaction databases

STRINGi100226.SCO1598.

Structurei

3D structure databases

ProteinModelPortaliO88058.
SMRiO88058. Positions 21-117.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L20P family.Curated

Phylogenomic databases

eggNOGiENOG4108YZX. Bacteria.
COG0292. LUCA.
HOGENOMiHOG000035046.
InParanoidiO88058.
KOiK02887.
OMAiRKAKEQM.
OrthoDBiPOG091H01B4.
PhylomeDBiO88058.

Family and domain databases

CDDicd07026. Ribosomal_L20. 1 hit.
HAMAPiMF_00382. Ribosomal_L20. 1 hit.
InterProiIPR005813. Ribosomal_L20.
[Graphical view]
PANTHERiPTHR10986. PTHR10986. 1 hit.
PfamiPF00453. Ribosomal_L20. 1 hit.
[Graphical view]
PRINTSiPR00062. RIBOSOMALL20.
TIGRFAMsiTIGR01032. rplT_bact. 1 hit.
PROSITEiPS00937. RIBOSOMAL_L20. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O88058-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARVKRAVNA HKKRRAILEQ ASGYRGQRSR LYRKAKEQVT HSLVYNYNDR
60 70 80 90 100
KKRKGDFRQL WIQRINAAAR ANGITYNRFI QGLKAANVEV DRKILAELAV
110 120
NDPNAFAALV EVAQKALPSD VNAPKAA
Length:127
Mass (Da):14,387
Last modified:November 1, 1998 - v1
Checksum:i80D1308A1266F593
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL939109 Genomic DNA. Translation: CAA20809.1.
PIRiT36833.
RefSeqiNP_625874.1. NC_003888.3.
WP_003977226.1. NC_003888.3.

Genome annotation databases

EnsemblBacteriaiCAA20809; CAA20809; CAA20809.
GeneIDi1097029.
KEGGisco:SCO1598.
PATRICi23732792. VBIStrCoe124346_1610.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL939109 Genomic DNA. Translation: CAA20809.1.
PIRiT36833.
RefSeqiNP_625874.1. NC_003888.3.
WP_003977226.1. NC_003888.3.

3D structure databases

ProteinModelPortaliO88058.
SMRiO88058. Positions 21-117.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi100226.SCO1598.

Proteomic databases

PRIDEiO88058.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAA20809; CAA20809; CAA20809.
GeneIDi1097029.
KEGGisco:SCO1598.
PATRICi23732792. VBIStrCoe124346_1610.

Phylogenomic databases

eggNOGiENOG4108YZX. Bacteria.
COG0292. LUCA.
HOGENOMiHOG000035046.
InParanoidiO88058.
KOiK02887.
OMAiRKAKEQM.
OrthoDBiPOG091H01B4.
PhylomeDBiO88058.

Family and domain databases

CDDicd07026. Ribosomal_L20. 1 hit.
HAMAPiMF_00382. Ribosomal_L20. 1 hit.
InterProiIPR005813. Ribosomal_L20.
[Graphical view]
PANTHERiPTHR10986. PTHR10986. 1 hit.
PfamiPF00453. Ribosomal_L20. 1 hit.
[Graphical view]
PRINTSiPR00062. RIBOSOMALL20.
TIGRFAMsiTIGR01032. rplT_bact. 1 hit.
PROSITEiPS00937. RIBOSOMAL_L20. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL20_STRCO
AccessioniPrimary (citable) accession number: O88058
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: November 1, 1998
Last modified: September 7, 2016
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.