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Protein
Submitted name:

Transcriptional regulator

Gene

SCO6598

Organism
Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationSAAS annotation

Keywords - Ligandi

DNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulatorImported
Gene namesi
Ordered Locus Names:SCO6598Imported
OrganismiStreptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)Imported
Taxonomic identifieri100226 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaStreptomycetalesStreptomycetaceaeStreptomycesStreptomyces albidoflavus group
Proteomesi
  • UP000001973 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi100226.SCO6598.

Structurei

3D structure databases

ProteinModelPortaliO87853.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini6 – 6055HTH lacI-type DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains HTH lacI-type DNA-binding domain.SAAS annotation

Phylogenomic databases

HOGENOMiHOG000220179.
InParanoidiO87853.
OMAiRDIAFIC.
OrthoDBiPOG091H01VT.
PhylomeDBiO87853.

Family and domain databases

CDDicd01392. HTH_LacI. 1 hit.
Gene3Di1.10.260.40. 1 hit.
InterProiIPR000843. HTH_LacI.
IPR010982. Lambda_DNA-bd_dom.
IPR028082. Peripla_BP_I.
[Graphical view]
PfamiPF00356. LacI. 1 hit.
[Graphical view]
PRINTSiPR00036. HTHLACI.
SMARTiSM00354. HTH_LACI. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
SSF53822. SSF53822. 1 hit.
PROSITEiPS50932. HTH_LACI_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O87853-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRQAPTLED VAREAGVSRA TVSRVVNGVR NVDPAIQDLV RRAIERTGYA
60 70 80 90 100
PNQAARQLVT RRTTTVALVV SGAGDATDTE QNAFATRVFA DPFFGRVVGG
110 120 130 140 150
VVGHLRPRRM HPVLMFAETP EARQEVVAYL RQGGADGALV VSTHPDDPLP
160 170 180 190 200
ALLAGAGLPA VLFARPGRPV PLSYVDLAHR EGGRLAAEHL LERGCRRIAT
210 220 230 240 250
VAGPLAVAAS QERLAGFRDT LARHGHPYVP VAEGGFTVDS GMAAMTSLLA
260 270 280 290 300
EHPDTDGVFT ANDLMAQGAV QVLRDHGRRV PQDVAVVGFD DSSVAVTCRP
310 320 330 340
RLTTVRQPVE EMAATMARLL DDHIKGARGE PTSVVFDPEL VVRESA
Length:346
Mass (Da):36,869
Last modified:November 1, 1998 - v1
Checksum:iC20C31C4FF2DB032
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL939128 Genomic DNA. Translation: CAA19791.1.
PIRiT35786.
RefSeqiNP_630677.1. NC_003888.3.
WP_003972380.1. NC_003888.3.

Genome annotation databases

EnsemblBacteriaiCAA19791; CAA19791; CAA19791.
GeneIDi1102037.
KEGGisco:SCO6598.
PATRICi23743119. VBIStrCoe124346_6705.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL939128 Genomic DNA. Translation: CAA19791.1.
PIRiT35786.
RefSeqiNP_630677.1. NC_003888.3.
WP_003972380.1. NC_003888.3.

3D structure databases

ProteinModelPortaliO87853.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi100226.SCO6598.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAA19791; CAA19791; CAA19791.
GeneIDi1102037.
KEGGisco:SCO6598.
PATRICi23743119. VBIStrCoe124346_6705.

Phylogenomic databases

HOGENOMiHOG000220179.
InParanoidiO87853.
OMAiRDIAFIC.
OrthoDBiPOG091H01VT.
PhylomeDBiO87853.

Family and domain databases

CDDicd01392. HTH_LacI. 1 hit.
Gene3Di1.10.260.40. 1 hit.
InterProiIPR000843. HTH_LacI.
IPR010982. Lambda_DNA-bd_dom.
IPR028082. Peripla_BP_I.
[Graphical view]
PfamiPF00356. LacI. 1 hit.
[Graphical view]
PRINTSiPR00036. HTHLACI.
SMARTiSM00354. HTH_LACI. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
SSF53822. SSF53822. 1 hit.
PROSITEiPS50932. HTH_LACI_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO87853_STRCO
AccessioniPrimary (citable) accession number: O87853
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: September 7, 2016
This is version 96 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.