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Protein
Submitted name:

DNA binding protein HpkR

Gene

hpkR

Organism
Pseudomonas syringae pv. syringae
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
DNA binding protein HpkRImported
Gene namesi
Name:hpkRImported
OrganismiPseudomonas syringae pv. syringaeImported
Taxonomic identifieri321 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonasPseudomonas syringae

Interactioni

Protein-protein interaction databases

STRINGi205918.Psyr_3357.

Structurei

3D structure databases

ProteinModelPortaliO87793.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 6060HTH lysR-type DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH lysR-type DNA-binding domain.UniRule annotation

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O87793-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSYSPEALEA FAQIAALGSF SAAARRLGKS QSTIREAIAR LEIDLGLELF
60 70 80 90 100
DRFSRQPVLT EAGRVMLGRV DDLLCASDRL RRAAARLAAG VEPRLTLVLS
110 120 130 140 150
DANQFADFER LMTELDQRFP ELEMECVFAE HGDAISLVQS GRASLGLLSA
160 170 180 190 200
QASYPPEIGH ATIDESADFG LFVSHKHPLA ALERVDYQQL SRYRALRLNT
210 220 230 240 250
LIEHSIPTDD LPTSGHRHWS APNYLLLMDM AAFGFGWSAL PRWLVSRYSG
260 270 280 290 300
GLLKELHVSG WPRRSAVDVI WSFPAQSGAC GRVAAGVRWC RSRESETGLS
310 320 330 340 350
EFLYATSPSN LATATESRYK ECLQPDGRRN QAWLSIGTPT SSRVIRQWMT

PIGTRRT
Length:357
Mass (Da):39,598
Last modified:November 1, 1998 - v1
Checksum:iC6040071CF6003F9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF001355 Genomic DNA. Translation: AAC61657.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF001355 Genomic DNA. Translation: AAC61657.1.

3D structure databases

ProteinModelPortaliO87793.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi205918.Psyr_3357.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Klotz M.G., Cambronne E.D., Hassett D.J.
    Submitted (MAR-1999) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 61Imported.

Entry informationi

Entry nameiO87793_PSESY
AccessioniPrimary (citable) accession number: O87793
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: February 17, 2016
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.