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Protein
Submitted name:

Chaperone SycD

Gene

sycD

Organism
Yersinia enterocolitica
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Chaperone SycDImported
Gene namesi
Name:sycDImported
Encoded oniPlasmid pYVe227Imported
OrganismiYersinia enterocoliticaImported
Taxonomic identifieri630 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeYersinia

Interactioni

Protein-protein interaction databases

DIPiDIP-60759N.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2VGXX-ray1.95A/B21-163[»]
2VGYX-ray2.60A21-163[»]
4AM9X-ray2.50A21-163[»]
SMRiO87496. Positions 21-154.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Family and domain databases

Gene3Di1.25.40.10. 1 hit.
InterProiIPR005415. T3SS_Ca_resp_chp_LcrH/SycD.
IPR016379. T3SS_Ca_resp_chp_LcrH/SycD_sub.
IPR011716. TPR-3.
IPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF07720. TPR_3. 1 hit.
[Graphical view]
PIRSFiPIRSF003165. Chaperone_SicA. 1 hit.
PRINTSiPR01595. SYCDCHAPRONE.
SUPFAMiSSF48452. SSF48452. 1 hit.
TIGRFAMsiTIGR02552. LcrH_SycD. 1 hit.
PROSITEiPS50293. TPR_REGION. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O87496-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQQETTDTQE YQLAMESFLK GGGTIAMLNE ISSDTLEQLY SLAFNQYQSG
60 70 80 90 100
KYEDAHKVFQ ALCVLDHYDS RFFLGLGACR QAMGQYDLAI HSYSYGAVMD
110 120 130 140 150
IKEPRFPFHA AECLLQKGEL AEAESGLFLA QELIANKPEF KELSTRVSSM
160
LEAIKLKKEM KHECVDNP
Length:168
Mass (Da):18,995
Last modified:November 1, 1998 - v1
Checksum:iD7F631B140EB16AE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF102990 Genomic DNA. Translation: AAD16814.1.
RefSeqiNP_052391.1. NC_002120.1.
WP_010891209.1. NZ_KN150737.1.

Genome annotation databases

EnsemblBacteriaiAJJ25666; AJJ25666; CH48_4222.
GeneIDi1239122.
KEGGipg:1239122.
yet:CH48_4222.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF102990 Genomic DNA. Translation: AAD16814.1.
RefSeqiNP_052391.1. NC_002120.1.
WP_010891209.1. NZ_KN150737.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2VGXX-ray1.95A/B21-163[»]
2VGYX-ray2.60A21-163[»]
4AM9X-ray2.50A21-163[»]
SMRiO87496. Positions 21-154.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-60759N.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAJJ25666; AJJ25666; CH48_4222.
GeneIDi1239122.
KEGGipg:1239122.
yet:CH48_4222.

Family and domain databases

Gene3Di1.25.40.10. 1 hit.
InterProiIPR005415. T3SS_Ca_resp_chp_LcrH/SycD.
IPR016379. T3SS_Ca_resp_chp_LcrH/SycD_sub.
IPR011716. TPR-3.
IPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF07720. TPR_3. 1 hit.
[Graphical view]
PIRSFiPIRSF003165. Chaperone_SicA. 1 hit.
PRINTSiPR01595. SYCDCHAPRONE.
SUPFAMiSSF48452. SSF48452. 1 hit.
TIGRFAMsiTIGR02552. LcrH_SycD. 1 hit.
PROSITEiPS50293. TPR_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Detailed genetic map of the pYVe227 plasmid of Yersinia enterocolitica serotype O:9."
    Iriarte M., Lambermont I., Kerbourch C., Cornelis G.R.
    Submitted (OCT-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: W22703Imported.
    Plasmid: pYVe227
  2. "Structure of the Yersinia enterocolitica type III secretion translocator chaperone SycD."
    Buttner C.R., Sorg I., Cornelis G.R., Heinz D.W., Niemann H.H.
    J. Mol. Biol. 375:997-1012(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.95 ANGSTROMS) OF 21-163.
  3. "Crystal structure of the Yersinia enterocolitica type III secretion chaperone SycD in complex with a peptide of the minor translocator YopD."
    Schreiner M., Niemann H.H.
    BMC Struct. Biol. 12:13-13(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.50 ANGSTROMS) OF 21-163.

Entry informationi

Entry nameiO87496_YEREN
AccessioniPrimary (citable) accession number: O87496
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: June 8, 2016
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, PlasmidImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.