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Protein

HTH-type transcriptional regulator GlxA

Gene

glxA

Organism
Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi239 – 257H-T-H motifPROSITE-ProRule annotationAdd BLAST19

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
HTH-type transcriptional regulator GlxA
Gene namesi
Name:glxA
Ordered Locus Names:R00086
ORF Names:SMc02609
OrganismiRhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)
Taxonomic identifieri266834 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
Proteomesi
  • UP000001976 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001945231 – 324HTH-type transcriptional regulator GlxAAdd BLAST324

Interactioni

Protein-protein interaction databases

STRINGi266834.SMc02609.

Structurei

3D structure databases

ProteinModelPortaliO87389.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105ECQ. Bacteria.
COG4977. LUCA.
HOGENOMiHOG000063196.
OMAiMEANMED.

Family and domain databases

Gene3Di1.10.10.60. 2 hits.
3.40.50.880. 1 hit.
InterProiView protein in InterPro
IPR029062. Class_I_gatase-like.
IPR002818. DJ-1/PfpI.
IPR009057. Homeobox-like.
IPR018060. HTH_AraC.
IPR018062. HTH_AraC-typ_CS.
IPR020449. Tscrpt_reg_HTH_AraC-type.
PfamiView protein in Pfam
PF01965. DJ-1_PfpI. 1 hit.
PF12833. HTH_18. 1 hit.
PRINTSiPR00032. HTHARAC.
SMARTiView protein in SMART
SM00342. HTH_ARAC. 1 hit.
SUPFAMiSSF46689. SSF46689. 2 hits.
SSF52317. SSF52317. 1 hit.
PROSITEiView protein in PROSITE
PS00041. HTH_ARAC_FAMILY_1. 1 hit.
PS01124. HTH_ARAC_FAMILY_2. 1 hit.

Sequencei

Sequence statusi: Complete.

O87389-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAASSDSRNV QRIGFLLVRN FALMSYASAT EPLRAANLLA GRPLYQIVPL
60 70 80 90 100
APGGGTVASS SGLSVGCADL ESEGESCHTV FVCAGGEPTD WADTSASHTT
110 120 130 140 150
LRRLSRLGIR IGGISSGAFV LAAAGLLDNR DFTIHWEHAP ALKEAFPHLN
160 170 180 190 200
PRHARFVLDG GIATCGGGVA PLDMMHAMIA ERLGTDFARR VSDWYLHAAV
210 220 230 240 250
AEPAAPQRGS AAERFGTNHP ALLAVLEKME TAIERPLDRT AMARLAGVSP
260 270 280 290 300
RHLDRLFREH RGTGFLDTYR EIRLRHARRL LQQSPLSIPE IAYATGFSSP
310 320
AHFSNAFKRL FSQTPGSLRR RSGS
Length:324
Mass (Da):34,960
Last modified:November 1, 1998 - v1
Checksum:i4D622F5473575D0D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF055582 Genomic DNA. Translation: AAC62219.1.
AL591688 Genomic DNA. Translation: CAC41473.1.
RefSeqiNP_384192.1. NC_003047.1.
WP_003536327.1. NC_003047.1.

Genome annotation databases

EnsemblBacteriaiCAC41473; CAC41473; SMc02609.
GeneIDi1231717.
KEGGisme:SMc02609.
PATRICi23629341. VBISinMel96828_1443.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF055582 Genomic DNA. Translation: AAC62219.1.
AL591688 Genomic DNA. Translation: CAC41473.1.
RefSeqiNP_384192.1. NC_003047.1.
WP_003536327.1. NC_003047.1.

3D structure databases

ProteinModelPortaliO87389.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi266834.SMc02609.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAC41473; CAC41473; SMc02609.
GeneIDi1231717.
KEGGisme:SMc02609.
PATRICi23629341. VBISinMel96828_1443.

Phylogenomic databases

eggNOGiENOG4105ECQ. Bacteria.
COG4977. LUCA.
HOGENOMiHOG000063196.
OMAiMEANMED.

Family and domain databases

Gene3Di1.10.10.60. 2 hits.
3.40.50.880. 1 hit.
InterProiView protein in InterPro
IPR029062. Class_I_gatase-like.
IPR002818. DJ-1/PfpI.
IPR009057. Homeobox-like.
IPR018060. HTH_AraC.
IPR018062. HTH_AraC-typ_CS.
IPR020449. Tscrpt_reg_HTH_AraC-type.
PfamiView protein in Pfam
PF01965. DJ-1_PfpI. 1 hit.
PF12833. HTH_18. 1 hit.
PRINTSiPR00032. HTHARAC.
SMARTiView protein in SMART
SM00342. HTH_ARAC. 1 hit.
SUPFAMiSSF46689. SSF46689. 2 hits.
SSF52317. SSF52317. 1 hit.
PROSITEiView protein in PROSITE
PS00041. HTH_ARAC_FAMILY_1. 1 hit.
PS01124. HTH_ARAC_FAMILY_2. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiGLXA_RHIME
AccessioniPrimary (citable) accession number: O87389
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: November 1, 1998
Last modified: February 15, 2017
This is version 103 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.