O87387 (SOXD_RHIME) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Sarcosine oxidase subunit delta
Short name=Sarcosine oxidase subunit D
EC=1.5.3.1

Gene names

Name:	soxD
Ordered Locus Names:	R00084
ORF Names:	SMc02607

Organism

Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti) [Complete proteome] [HAMAP]

Taxonomic identifier

266834 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium

Protein attributes

Sequence length	92 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10-methylenetetrahydrofolate.
Catalytic activity	Sarcosine + H2O + O2 = glycine + formaldehyde + H2O2.
Subcellular location	Cytoplasm By similarity.

Ontologies

Keywords
Cellular component	Cytoplasm
Molecular function	Oxidoreductase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	tetrahydrofolate metabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	sarcosine oxidase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 92	92	Sarcosine oxidase subunit delta		PRO_0000072050

Sequences

	Sequence		Length	Mass (Da)
	O87387 [UniParc]. Last modified November 1, 1998. Version 1. Checksum: FFD82F0CF6E805FE	FASTA	92	10,459
	10 20 30 40 50 60 MASLVPCPNC GRRPKEEFTI KGAALSRPEA DADSIDWFDY VYLRENPRGA YEEYWHHTSG 70 80 90 CRRWLVVARD TVTHEIAACC DAAGRARSEA RK

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	Powers E.L., Vuyyuru V., Kahn M.L. Submitted (MAR-1998) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: 1021.
[2]	"Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021." Capela D., Barloy-Hubler F., Gouzy J., Bothe G., Ampe F., Batut J., Boistard P., Becker A., Boutry M., Cadieu E., Dreano S., Gloux S., Godrie T., Goffeau A., Kahn D., Kiss E., Lelaure V., Masuy D. , Pohl T., Portetelle D., Puehler A., Purnelle B., Ramsperger U., Renard C., Thebault P., Vandenbol M., Weidner S., Galibert F. Proc. Natl. Acad. Sci. U.S.A. 98:9877-9882(2001) [PubMed: 11481430] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 1021.
[3]	"The composite genome of the legume symbiont Sinorhizobium meliloti." Galibert F., Finan T.M., Long S.R., Puehler A., Abola P., Ampe F., Barloy-Hubler F., Barnett M.J., Becker A., Boistard P., Bothe G., Boutry M., Bowser L., Buhrmester J., Cadieu E., Capela D., Chain P., Cowie A. , Davis R.W., Dreano S., Federspiel N.A., Fisher R.F., Gloux S., Godrie T., Goffeau A., Golding B., Gouzy J., Gurjal M., Hernandez-Lucas I., Hong A., Huizar L., Hyman R.W., Jones T., Kahn D., Kahn M.L., Kalman S., Keating D.H., Kiss E., Komp C., Lelaure V., Masuy D., Palm C., Peck M.C., Pohl T.M., Portetelle D., Purnelle B., Ramsperger U., Surzycki R., Thebault P., Vandenbol M., Vorhoelter F.J., Weidner S., Wells D.H., Wong K., Yeh K.-C., Batut J. Science 293:668-672(2001) [PubMed: 11474104] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 1021.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AF055582 Genomic DNA. Translation: AAC62217.1. AL591688 Genomic DNA. Translation: CAC41471.1.
RefSeq	NP_384190.1. NC_003047.1.
3D structure databases
ProteinModelPortal	O87387.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	1231715.
GenomeReviews	Gene locus R00084 in contig AL591688_GR.
KEGG	sme:SMc02607.
NMPDR	fig|266834.1.peg.1378.
PATRIC	23629337. VBISinMel96828_1441.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG299493.
OMA	WFDYVYL.
ProtClustDB	CLSK784603.
Enzyme and pathway databases
BioCyc	SMEL266834:SMC02607-MONOMER.
Family and domain databases
InterPro	IPR006279. SoxD. [Graphical view]
KO	K00304.
Pfam	PF04267. SoxD. 1 hit. [Graphical view]
TIGRFAMs	TIGR01374. SoxD. 1 hit.
ProtoNet	Search...

Entry information

Entry name

SOXD_RHIME

Accession

Primary (citable) accession number: O87387

Entry history

Integrated into UniProtKB/Swiss-Prot:	May 30, 2000
Last sequence update:	November 1, 1998
Last modified:	January 25, 2012
This is version 61 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program