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Protein

Protein trl

Gene

trl

Organism
Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Recommended name:
Protein trl
Alternative name(s):
tRNA-associated locus protein
Gene namesi
Name:trl
Ordered Locus Names:HP_0945.1
OrganismiHelicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
Taxonomic identifieri85962 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter
ProteomesiUP000000429 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 8686Protein trlPRO_0000065633Add
BLAST

Family & Domainsi

Phylogenomic databases

OMAiSCWSFFS.

Family and domain databases

InterProiIPR025113. TRL-like.
[Graphical view]
PfamiPF13146. TRL. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O87326-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSGCASSSPT GTLITMVTMP VSGNDAQYSK EGRASCWSVF SLVAAGNCSV
60 70 80
EKAAKSGGVT KIKMVSRETN NFLGIVGKYT TIVQGD
Length:86
Mass (Da):8,871
Last modified:April 27, 2001 - v2
Checksum:i786E7F626E09D20B
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti12 – 121T → A in strain: MI 212.
Natural varianti26 – 261A → V in strain: MI 212.

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF035574 Genomic DNA. Translation: AAC35746.1.
AE000511 Genomic DNA. No translation available.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF035574 Genomic DNA. Translation: AAC35746.1.
AE000511 Genomic DNA. No translation available.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

OMAiSCWSFFS.

Family and domain databases

InterProiIPR025113. TRL-like.
[Graphical view]
PfamiPF13146. TRL. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "A novel tRNA-associated locus (trl) from Helicobacter pylori is co-transcribed with tRNA(Gly) and reveals genetic diversity."
    Dundon W.G., Marshall D.G., Morain C.A., Smyth C.J.
    Microbiology 145:1289-1298(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: MI 212.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700392 / 26695.

Entry informationi

Entry nameiTRL_HELPY
AccessioniPrimary (citable) accession number: O87326
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 27, 2001
Last sequence update: April 27, 2001
Last modified: July 22, 2015
This is version 43 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Helicobacter pylori
    Helicobacter pylori (strain 26695): entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.