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O87326 (TRL_HELPY) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 40. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Protein trl
Alternative name(s):
tRNA-associated locus protein
Gene names
Name:trl
Ordered Locus Names:HP_0945.1
OrganismHelicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori) [Reference proteome] [HAMAP]
Taxonomic identifier85962 [NCBI]
Taxonomic lineageBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter

Protein attributes

Sequence length86 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 8686Protein trl
PRO_0000065633

Natural variations

Natural variant121T → A in strain: MI 212.
Natural variant261A → V in strain: MI 212.

Sequences

Sequence LengthMass (Da)Tools
O87326 [UniParc].

Last modified April 27, 2001. Version 2.
Checksum: 786E7F626E09D20B

FASTA868,871
        10         20         30         40         50         60 
MSGCASSSPT GTLITMVTMP VSGNDAQYSK EGRASCWSVF SLVAAGNCSV EKAAKSGGVT 

        70         80 
KIKMVSRETN NFLGIVGKYT TIVQGD 

« Hide

References

« Hide 'large scale' references
[1]"A novel tRNA-associated locus (trl) from Helicobacter pylori is co-transcribed with tRNA(Gly) and reveals genetic diversity."
Dundon W.G., Marshall D.G., Morain C.A., Smyth C.J.
Microbiology 145:1289-1298(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: MI 212.
[2]"The complete genome sequence of the gastric pathogen Helicobacter pylori."
Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J. expand/collapse author list , Khalak H.G., Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., Smith H.O., Fraser C.M., Venter J.C.
Nature 388:539-547(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 700392 / 26695.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AF035574 Genomic DNA. Translation: AAC35746.1.
AE000511 Genomic DNA. No translation available.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Phylogenomic databases

OMARASCWSI.

Family and domain databases

InterProIPR025113. TRL-like.
[Graphical view]
PfamPF13146. TRL. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameTRL_HELPY
AccessionPrimary (citable) accession number: O87326
Entry history
Integrated into UniProtKB/Swiss-Prot: April 27, 2001
Last sequence update: April 27, 2001
Last modified: May 1, 2013
This is version 40 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Helicobacter pylori

Helicobacter pylori (strain 26695): entries and gene names