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Protein
Submitted name:

Xylanase

Gene

xynA

Organism
Clostridium thermocellum (Ruminiclostridium thermocellum)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Carbohydrate metabolism, Polysaccharide degradation, Xylan degradationImported

Protein family/group databases

CAZyiCBM6. Carbohydrate-Binding Module Family 6.
GH11. Glycoside Hydrolase Family 11.
mycoCLAPiXYN11A_CLOTH.

Names & Taxonomyi

Protein namesi
Submitted name:
XylanaseImported
Gene namesi
Name:xynAImported
OrganismiClostridium thermocellum (Ruminiclostridium thermocellum)Imported
Taxonomic identifieri1515 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesRuminococcaceaeRuminiclostridium

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2828Sequence analysisAdd
BLAST
Chaini29 – 683655Sequence analysisPRO_5004160294Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi203119.Cthe_2972.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2C71X-ray1.05A480-683[»]
2C79X-ray1.50A480-683[»]
ProteinModelPortaliO87119.
SMRiO87119. Positions 31-233, 251-376, 480-683.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO87119.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini31 – 225195GH11 (glycosyl hydrolase family 11)InterPro annotationAdd
BLAST
Domaini252 – 374123CBM6 (carbohydrate binding type-6)InterPro annotationAdd
BLAST
Domaini388 – 45669DockerinInterPro annotationAdd
BLAST
Domaini480 – 658179NodB homologyInterPro annotationAdd
BLAST

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4107T94. Bacteria.
COG0726. LUCA.
COG5498. LUCA.

Family and domain databases

Gene3Di1.10.1330.10. 1 hit.
2.60.120.180. 1 hit.
2.60.120.260. 1 hit.
3.20.20.370. 1 hit.
InterProiIPR006584. Cellulose-bd_IV.
IPR005084. CMB_fam6.
IPR013320. ConA-like_dom.
IPR002105. Dockerin_1_rpt.
IPR016134. Dockerin_dom.
IPR018247. EF_Hand_1_Ca_BS.
IPR008979. Galactose-bd-like.
IPR013319. GH11/12.
IPR018208. GH11_AS_1.
IPR033119. GH11_AS_2.
IPR033123. GH11_dom.
IPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR001137. Glyco_hydro_11.
IPR002509. NODB_dom.
[Graphical view]
PfamiPF03422. CBM_6. 1 hit.
PF00404. Dockerin_1. 2 hits.
PF00457. Glyco_hydro_11. 1 hit.
PF01522. Polysacc_deac_1. 1 hit.
[Graphical view]
PRINTSiPR00911. GLHYDRLASE11.
SMARTiSM00606. CBD_IV. 1 hit.
[Graphical view]
SUPFAMiSSF49785. SSF49785. 1 hit.
SSF49899. SSF49899. 1 hit.
SSF63446. SSF63446. 1 hit.
SSF88713. SSF88713. 1 hit.
PROSITEiPS51175. CBM6. 1 hit.
PS00448. CLOS_CELLULOSOME_RPT. 2 hits.
PS51766. DOCKERIN. 1 hit.
PS00018. EF_HAND_1. 2 hits.
PS00776. GH11_1. 1 hit.
PS00777. GH11_2. 1 hit.
PS51761. GH11_3. 1 hit.
PS51677. NODB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O87119-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRQKLLITFL ILITFTVSLT LFPVNVRADV VITSNQTGTH GGYNFEYWKD
60 70 80 90 100
TGNGTMVLKD GGAFSCEWSN INNILFRKGF KYDETKTHDQ LGYITVTYSC
110 120 130 140 150
NYQPNGNSYL GVYGWTSNPL VEYYIIESWG TWRPPGATPK GTITVDGGTY
160 170 180 190 200
EIYETTRVNQ PSIKGTATFQ QYWSVRTSKR TSGTISVTEH FKAWERLGMK
210 220 230 240 250
MGKMYEVALV VEGYQSSGKA DVTSMTITVG NAPSTSSPPG PTPEPTPRSA
260 270 280 290 300
FSKIEAEEYN SLKSSTIQTI GTSDGGSGIG YIESGDYLVF NKINFGNGAN
310 320 330 340 350
SFKARVASGA DTPTNIQLRL GSPTGTLIGT LTVASTGGWN NYEEKSCSIT
360 370 380 390 400
NTTGQHDLYL VFSGPVNIDY FIFDSNGVNP TPTSQPQQGQ VLGDLNGDKQ
410 420 430 440 450
VNSTDYTALK RHLLNITRLS GTALANADLN GDGKVDSTDL MILHRYLLGI
460 470 480 490 500
ISSFPRSNPQ PSSNPQPSSN PQPTINPNAK LVALTFDDGP DNVLTARVLD
510 520 530 540 550
KLDKYNVKAT FMVVGQRVND STAAIIRRMV NSGHEIGNHS WSYSGMANMS
560 570 580 590 600
PDQIRKSIAD TNAVIQKYAG TTPKFFRPPN LETSPTLFNN VDLVFVGGLT
610 620 630 640 650
ANDWIPSTTA EQRAAAVING VRDGTIILLH DVQPEPHPTP EALDIIIPTL
660 670 680
KSRGYEFVTL TELFTLKGVP IDPSVKRMYN SVP
Length:683
Mass (Da):74,513
Last modified:November 1, 1998 - v1
Checksum:iC5F39D05C2145ABF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB010958 Genomic DNA. Translation: BAA33543.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB010958 Genomic DNA. Translation: BAA33543.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2C71X-ray1.05A480-683[»]
2C79X-ray1.50A480-683[»]
ProteinModelPortaliO87119.
SMRiO87119. Positions 31-233, 251-376, 480-683.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi203119.Cthe_2972.

Protein family/group databases

CAZyiCBM6. Carbohydrate-Binding Module Family 6.
GH11. Glycoside Hydrolase Family 11.
mycoCLAPiXYN11A_CLOTH.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG4107T94. Bacteria.
COG0726. LUCA.
COG5498. LUCA.

Miscellaneous databases

EvolutionaryTraceiO87119.

Family and domain databases

Gene3Di1.10.1330.10. 1 hit.
2.60.120.180. 1 hit.
2.60.120.260. 1 hit.
3.20.20.370. 1 hit.
InterProiIPR006584. Cellulose-bd_IV.
IPR005084. CMB_fam6.
IPR013320. ConA-like_dom.
IPR002105. Dockerin_1_rpt.
IPR016134. Dockerin_dom.
IPR018247. EF_Hand_1_Ca_BS.
IPR008979. Galactose-bd-like.
IPR013319. GH11/12.
IPR018208. GH11_AS_1.
IPR033119. GH11_AS_2.
IPR033123. GH11_dom.
IPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR001137. Glyco_hydro_11.
IPR002509. NODB_dom.
[Graphical view]
PfamiPF03422. CBM_6. 1 hit.
PF00404. Dockerin_1. 2 hits.
PF00457. Glyco_hydro_11. 1 hit.
PF01522. Polysacc_deac_1. 1 hit.
[Graphical view]
PRINTSiPR00911. GLHYDRLASE11.
SMARTiSM00606. CBD_IV. 1 hit.
[Graphical view]
SUPFAMiSSF49785. SSF49785. 1 hit.
SSF49899. SSF49899. 1 hit.
SSF63446. SSF63446. 1 hit.
SSF88713. SSF88713. 1 hit.
PROSITEiPS51175. CBM6. 1 hit.
PS00448. CLOS_CELLULOSOME_RPT. 2 hits.
PS51766. DOCKERIN. 1 hit.
PS00018. EF_HAND_1. 2 hits.
PS00776. GH11_1. 1 hit.
PS00777. GH11_2. 1 hit.
PS51761. GH11_3. 1 hit.
PS51677. NODB. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Nucleotide sequences of two contiguous and highly homologous xylanase genes xynA and xynB and characterization of XynA from Clostridium thermocellum."
    Hayashi H., Takehara M., Hattori T., Kimura T., Karita S., Sakka K., Ohmiya K.
    Appl. Microbiol. Biotechnol. 51:348-357(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: F1Imported.
  2. "Structure and activity of two metal ion-dependent acetylxylan esterases involved in plant cell wall degradation reveals a close similarity to peptidoglycan deacetylases."
    Taylor E.J., Gloster T.M., Turkenburg J.P., Vincent F., Brzozowski A.M., Dupont C., Shareck F., Centeno M.S., Prates J.A., Puchart V., Ferreira L.M., Fontes C.M., Biely P., Davies G.J.
    J. Biol. Chem. 281:10968-10975(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.05 ANGSTROMS) OF 480-683.

Entry informationi

Entry nameiO87119_CLOTM
AccessioniPrimary (citable) accession number: O87119
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: May 11, 2016
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.